Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Reverse (-)

22086737 .. 22089131

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGACTACTCCTCAGCTGCTGCTTCTGCATGTGATATCGATACTTCTCTGGATCTTAACACCAGGCCTCTCCGGCTTTTCGATGATTCTCCTCCGATCAAGAAAGAGGTGCATAGCAAGATTTTGATCGACTTTGGGAGGGAGCTTTCTGCAAAAGAAGAGAGTGGTGCTTTGGTAGAGGAATTGCACCGGGTGAGTTCCGAAAACAAGAAGCTAACAGAAATGTTAACGATGATGGGTGAGAGCTACAATGCTCTGAGAAGCCAATTGTTGGAGTACATGAACAAGAACCCAGAGAAGGAGCTTAGTCCAGTCTCCAAGAAAAGAAAGTCTGAAAGCAGTAACAATAACAACAATAGTGGTAACAACATCCTAAATGGCATCAACAATGGAAACTCTGAGAGCAGCTCCAGTGATGGAGAATCATGCAAGAAGCCAAGAGAAGAGACCATCAAGGCCAAAATTTATAGGTCTTATGTCAGGACCGAACCATCCGATATGACAAGCTTGGTTGTGAAAGATGGATTTCAATGGAGAAAATATGGCCAAAAAGTTACAAGGGACAATCCTTGTCCTAGAGCTTACTTCAAGTGCTCTTTTGCTCCAACCTGCCCAGTCAAAAAGAAGGTTCAAAGAAGTGTCGAGGACCAATCAATTCTGGTGGCAACTTATGAAGGTGAACACAACCATCCCCACCCTTCTCAAATCGAAGCATCATCGGGCTCAAACCGCTGCATGACCTTAGGATCAGTCCCCTGCTCAACCTCTCTTGGCTCCTCCGGACCAACCATCACTCTTGACTTGACAAAATCCAAGTCCAATACTACTGATACCAAGAGCCCCAAACAAAAAACTGAAACACCAGAAGTTCGAAAGTTTTTGGTGGAACAAATGGCGTCTTCCTTGACCAAAGATCCCAACTTCACCAAAGCACTTGCAGCAGCCATATCAGGAAGGATTCTTCAGCAAAATAGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

327

Amino Acids

36.08

Weight (kDa)

8.8

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	173 - 231	3.7e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccIII	TCCGGA	1 cut(s)	779
AciI	CCGC	1 cut(s)	730
AclWI	GGATC	3 cut(s)	60, 754, 908
AcoI	YGGCCR	1 cut(s)	544
AcsI	RAATTY	1 cut(s)	462
AcuI	CTGAAG	1 cut(s)	947
AcyI	GRCGYC	1 cut(s)	896
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	271, 298
AgsI	TTSAA	3 cut(s)	530, 589, 632
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	8 cut(s)	17, 145, 214, 246, 304, 408, 507, 581
AluI	AGCT	8 cut(s)	17, 145, 214, 246, 304, 408, 507, 581
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	2 cut(s)	319, 440
AlwI	GGATC	3 cut(s)	60, 754, 908
AlwNI	CAGNNNCTG	1 cut(s)	20
Aor13HI	TCCGGA	1 cut(s)	779
AoxI	GGCC	3 cut(s)	65, 456, 544
ApeKI	GCWGC	6 cut(s)	17, 20, 405, 732, 938, 941
ApoI	RAATTY	1 cut(s)	462
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
AspS9I	GGNCC	3 cut(s)	483, 646, 782
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	4 cut(s)	205, 251, 689, 916
AsuII	TTCGAA	1 cut(s)	871
AvaII	GGWCC	3 cut(s)	483, 646, 782
AxyI	CCTNAGG	1 cut(s)	742
BalI	TGGCCA	1 cut(s)	546
BanII	GRGCYC	2 cut(s)	725, 842
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	1 cut(s)	596
BbvCI	CCTCAGC	1 cut(s)	13
BbvI	GCAGC	6 cut(s)	4, 7, 417, 719, 950, 953
BccI	CCATC	7 cut(s)	229, 410, 458, 499, 515, 696, 797
BciT130I	CCWGG	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	319, 440
BfaI	CTAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	617
BglI	GCCNNNNNGGC	1 cut(s)	73
BisI	GCNGC	6 cut(s)	18, 21, 406, 733, 939, 942
BlsI	GCNGC	6 cut(s)	19, 22, 407, 734, 940, 943
Bme1390I	CCNGG	2 cut(s)	64, 191
Bme18I	GGWCC	3 cut(s)	483, 646, 782
BmgT120I	GGNCC	3 cut(s)	483, 646, 782
BmiI	GGNNCC	1 cut(s)	775
BmrFI	CCNGG	2 cut(s)	64, 191
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	2 cut(s)	390, 722
BmuI	ACTGGG	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	891
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpmI	CTGGAG	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	13
Bpu14I	TTCGAA	1 cut(s)	871
BpuMI	CCSGG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	896
BsaI	GGTCTC	1 cut(s)	440
BsaWI	WCCGGW	1 cut(s)	779
Bsc4I	CCNNNNNNNGG	2 cut(s)	271, 298
Bse1I	ACTGG	3 cut(s)	311, 411, 614
Bse21I	CCTNAGG	1 cut(s)	742
Bse8I	GATNNNNATC	1 cut(s)	125
BseAI	TCCGGA	1 cut(s)	779
BseBI	CCWGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	39
BseGI	GGATG	3 cut(s)	369, 491, 688
BseJI	GATNNNNATC	1 cut(s)	125
BseLI	CCNNNNNNNGG	2 cut(s)	271, 298
BseMII	CTCAG	3 cut(s)	27, 248, 390
BseNI	ACTGG	3 cut(s)	311, 411, 614
BseRI	GAGGAG	2 cut(s)	81, 766
BseXI	GCAGC	6 cut(s)	4, 7, 417, 719, 950, 953
BshFI	GGCC	3 cut(s)	67, 458, 546
BshVI	ATCGAT	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	596
BsiSI	CCGG	3 cut(s)	73, 190, 780
BslFI	GGGAC	2 cut(s)	575, 737
BslI	CCNNNNNNNGG	2 cut(s)	271, 298
BsmAI	GTCTC	2 cut(s)	319, 440
BsmFI	GGGAC	2 cut(s)	575, 737
BsnI	GGCC	3 cut(s)	67, 458, 546
Bso31I	GGTCTC	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	871
Bsp1286I	GDGCHC	3 cut(s)	596, 725, 842
Bsp13I	TCCGGA	1 cut(s)	779
Bsp143I	GATC	5 cut(s)	52, 96, 126, 746, 913
BspACI	CCGC	1 cut(s)	730
BspANI	GGCC	3 cut(s)	67, 458, 546
BspCNI	CTCAG	3 cut(s)	26, 249, 391
BspDI	ATCGAT	1 cut(s)	39
BspEI	TCCGGA	1 cut(s)	779
BspLI	GGNNCC	1 cut(s)	775
BspMI	ACCTGC	1 cut(s)	617
BspPI	GGATC	3 cut(s)	60, 754, 908
BspT104I	TTCGAA	1 cut(s)	871
BspTNI	GGTCTC	1 cut(s)	440
BsrI	ACTGG	3 cut(s)	311, 411, 614
BssMI	GATC	5 cut(s)	52, 96, 126, 746, 913
BssNI	GRCGYC	1 cut(s)	896
Bst2UI	CCWGG	1 cut(s)	64
Bst6I	CTCTTC	2 cut(s)	153, 438
BstACI	GRCGYC	1 cut(s)	896
BstBI	TTCGAA	1 cut(s)	871
BstDEI	CTNAG	5 cut(s)	13, 257, 305, 399, 742
BstF5I	GGATG	3 cut(s)	369, 491, 688
BstKTI	GATC	5 cut(s)	55, 99, 129, 749, 916
BstMAI	GTCTC	2 cut(s)	319, 440
BstMBI	GATC	5 cut(s)	52, 96, 126, 746, 913
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 73, 729, 938
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	62, 189
BstV1I	GCAGC	6 cut(s)	4, 7, 417, 719, 950, 953
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	2 cut(s)	52, 913
BstYI	RGATCY	2 cut(s)	52, 913
Bsu15I	ATCGAT	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	742
BsuRI	GGCC	3 cut(s)	67, 458, 546
BsuTUI	ATCGAT	1 cut(s)	39
BtsCI	GGATG	3 cut(s)	369, 491, 688
BtsIMutI	CAGTG	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	617
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	483, 646, 782
ClaI	ATCGAT	1 cut(s)	39
CseI	GACGC	1 cut(s)	885
Csp6I	GTAC	1 cut(s)	277
CspCI	CAANNNNNGTGG	4 cut(s)	340, 375, 642, 677
CviAII	CATG	4 cut(s)	30, 280, 426, 736
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	5 cut(s)	13, 257, 305, 399, 742
DpnI	GATC	5 cut(s)	54, 98, 128, 748, 915
DpnII	GATC	5 cut(s)	52, 96, 126, 746, 913
DraIII	CACNNNGTG	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	2 cut(s)	153, 438
EarI	CTCTTC	2 cut(s)	153, 438
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	2 cut(s)	725, 842
Eco31I	GGTCTC	1 cut(s)	440
Eco32I	GATATC	1 cut(s)	37
Eco47I	GGWCC	3 cut(s)	483, 646, 782
Eco57I	CTGAAG	1 cut(s)	947
Eco81I	CCTNAGG	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	37
EcoT38I	GRGCYC	2 cut(s)	725, 842
FaeI	CATG	4 cut(s)	33, 283, 429, 739
FaqI	GGGAC	2 cut(s)	575, 737
FatI	CATG	4 cut(s)	29, 279, 425, 735
Fnu4HI	GCNGC	6 cut(s)	18, 21, 406, 733, 939, 942
FokI	GGATG	3 cut(s)	356, 478, 675
FriOI	GRGCYC	2 cut(s)	725, 842
Fsp4HI	GCNGC	6 cut(s)	18, 21, 406, 733, 939, 942
FspBI	CTAG	1 cut(s)	576
GluI	GCNGC	6 cut(s)	18, 21, 406, 733, 939, 942
GsuI	CTGGAG	1 cut(s)	394
HaeIII	GGCC	3 cut(s)	67, 458, 546
HapII	CCGG	3 cut(s)	73, 190, 780
HgaI	GACGC	1 cut(s)	885
Hin1I	GRCGYC	1 cut(s)	896
Hin1II	CATG	4 cut(s)	33, 283, 429, 739
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	505
HinfI	GANTC	3 cut(s)	86, 422, 958
HpaI	GTTAAC	1 cut(s)	228
HpaII	CCGG	3 cut(s)	73, 190, 780
HphI	GGTGA	4 cut(s)	205, 251, 689, 916
Hpy166II	GTNNAC	2 cut(s)	228, 680
Hpy188I	TCNGA	6 cut(s)	96, 202, 258, 334, 400, 496
Hpy188III	TCNNGA	6 cut(s)	50, 100, 481, 780, 797, 951
Hpy8I	GTNNAC	2 cut(s)	228, 680
HpyAV	CCTTC	5 cut(s)	292, 619, 668, 708, 948
HpyCH4V	TGCA	7 cut(s)	29, 112, 152, 187, 429, 735, 938
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 73, 729, 938
HpyF3I	CTNAG	5 cut(s)	13, 257, 305, 399, 742
Hsp92I	GRCGYC	1 cut(s)	896
Hsp92II	CATG	4 cut(s)	33, 283, 429, 739
Kpn2I	TCCGGA	1 cut(s)	779
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	52, 96, 126, 746, 913
LmnI	GCTCC	5 cut(s)	142, 301, 413, 607, 779
Lsp1109I	GCAGC	6 cut(s)	4, 7, 417, 719, 950, 953
LweI	GCATC	2 cut(s)	390, 722
MaeI	CTAG	1 cut(s)	576
MaeIII	GTNAC	4 cut(s)	341, 362, 553, 974
MalI	GATC	5 cut(s)	54, 98, 128, 748, 915
MboI	GATC	5 cut(s)	52, 96, 126, 746, 913
MboII	GAAGA	4 cut(s)	170, 455, 891, 953
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	2 cut(s)	52, 913
MhlI	GDGCHC	3 cut(s)	596, 725, 842
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	4 cut(s)	182, 266, 462, 654
MluNI	TGGCCA	1 cut(s)	546
MmeI	TCCRAC	2 cut(s)	252, 629
MnlI	CCTC	9 cut(s)	22, 78, 100, 102, 132, 172, 637, 775, 787
Mox20I	TGGCCA	1 cut(s)	546
MroI	TCCGGA	1 cut(s)	779
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	2 cut(s)	57, 227
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	2 cut(s)	17, 732
MspI	CCGG	3 cut(s)	73, 190, 780
MspR9I	CCNGG	2 cut(s)	64, 191
MunI	CAATTG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	26, 73, 729, 938
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	5 cut(s)	52, 96, 126, 746, 913
NlaIII	CATG	4 cut(s)	33, 283, 429, 739
NlaIV	GGNNCC	1 cut(s)	775
NspI	RCATGY	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	871
PceI	AGGCCT	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	86, 422, 958
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	6 cut(s)	19, 22, 407, 734, 940, 943
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	1 cut(s)	775
PspPI	GGNCC	3 cut(s)	483, 646, 782
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	52, 913
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	2 cut(s)	57, 227
SatI	GCNGC	6 cut(s)	18, 21, 406, 733, 939, 942
Sau3AI	GATC	5 cut(s)	52, 96, 126, 746, 913
Sau96I	GGNCC	3 cut(s)	483, 646, 782
ScrFI	CCNGG	2 cut(s)	64, 191
SduI	GDGCHC	3 cut(s)	596, 725, 842
SfaNI	GCATC	2 cut(s)	390, 722
SfuI	TTCGAA	1 cut(s)	871
SinI	GGWCC	3 cut(s)	483, 646, 782
Sse9I	AATT	4 cut(s)	182, 266, 462, 654
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	1 cut(s)	730
SspMI	CTAG	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	62, 189
TaqI	TCGA	6 cut(s)	39, 81, 129, 642, 708, 871
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	4 cut(s)	182, 266, 462, 654
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	3 cut(s)	86, 422, 958
Tru1I	TTAA	2 cut(s)	57, 227
Tru9I	TTAA	2 cut(s)	57, 227
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	6 cut(s)	17, 20, 405, 732, 938, 941
TspDTI	ATGAA	2 cut(s)	296, 687
TspRI	CASTG	1 cut(s)	418
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	3 cut(s)	483, 646, 782
XapI	RAATTY	1 cut(s)	462
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.