Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Forward (+)

21127667 .. 21129416

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g22700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGACCATTCAGCTGCATATGATGATGATACTTCTTTGGATCTTAATTCCAGGCCTCTCAGACTTTTCGATGATACTCCGATTATTAAACAAGAGGTGCATAACAAAATATCGATCGACTTTGGGAGGCAGCTTTCCCCTACAGAAGAGAGTGGTCGTCTATTGGAAGAATTGCACAGGGTGAGTGCAGAAAACAAGAAGCTAACCGAAATGTTAACCGTGATGGGAGAGAACTACAATGCTTTGAGAAGCCAACTGTTGGAGTACATGAGCAAGAACCCAGAGAAGGAGCTTAGCCCAATTTCAAAGAAAAGAAAGTCTGAAAGCAGCAACAACAACACCAACAGTAACAATATCATGAATGGAGCAGTGAATGGAAACTCCGAAAGCAGCTCCAGTGATGGCGAATCGTTCAAGAAACCAAGGGAAGAGACCATCAAGGCAAAGGTTTCAAGGATTTATGTCCGGACTGAAGCATCTGATACAACAAGCCTGGTTGTGAAAGATGGATATCAATGGAGGAAATATGGCCAAAAAGTTACGAGGGATAATCCTTGTCCTAGAGCTTACTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTTCAAAGAAGTGTTGAGGACCAAACTATTTTGGTGGGAACTTATGAAGGTGAACACAACCACCCCAACCCTTCCCAAATTGAAGAAACATCGGGCTCAAACCGCATGACCATAGGATCGGTCCCTTACTCAACCTCCCTCGGTTCATCTGGACCAACAATTACTCTTGACTTGACCAAATCCAAGTCCAGTACTGCTGATGCCGAGGGCACAAAAGCAAGAACTGAAACACCCGAAGTTCGCAAATTTTTGGTTGAGCAGATGGCTTCTTCCTTGACGAAGGATCCCGATTTCACAAAAGCACTTGCAACAGCCATATCGGGAAGAATACTTCAACACAATACATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

321

Amino Acids

35.6

Weight (kDa)

7.68

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccIII	TCCGGA	1 cut(s)	465
AciI	CCGC	1 cut(s)	715
AclWI	GGATC	4 cut(s)	48, 736, 890, 903
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	1 cut(s)	857
AcuI	CTGAAG	1 cut(s)	492
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	266, 805
AfiI	CCNNNNNNNGG	2 cut(s)	259, 286
AgsI	TTSAA	7 cut(s)	306, 415, 453, 574, 617, 695, 947
AjnI	CCWGG	2 cut(s)	50, 492
AluBI	AGCT	7 cut(s)	14, 133, 202, 292, 393, 566, 594
AluI	AGCT	7 cut(s)	14, 133, 202, 292, 393, 566, 594
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	4 cut(s)	48, 736, 890, 903
Aor13HI	TCCGGA	1 cut(s)	465
AoxI	GGCC	2 cut(s)	53, 529
ApeKI	GCWGC	5 cut(s)	14, 130, 327, 390, 594
ApoI	RAATTY	1 cut(s)	857
AspS9I	GGNCC	4 cut(s)	4, 631, 733, 764
AsuHPI	GGTGA	2 cut(s)	193, 674
AvaII	GGWCC	4 cut(s)	4, 631, 733, 764
BaeGI	GKGCMC	1 cut(s)	824
BalI	TGGCCA	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	895
BanII	GRGCYC	1 cut(s)	710
BbvI	GCAGC	4 cut(s)	142, 339, 402, 581
BccI	CCATC	5 cut(s)	217, 395, 443, 500, 868
BciT130I	CCWGG	2 cut(s)	52, 494
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	5 cut(s)	15, 131, 328, 391, 595
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	5 cut(s)	16, 132, 329, 392, 596
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	2 cut(s)	52, 494
Bme18I	GGWCC	4 cut(s)	4, 631, 733, 764
BmgT120I	GGNCC	4 cut(s)	4, 631, 733, 764
BmiI	GGNNCC	2 cut(s)	735, 897
BmrFI	CCNGG	2 cut(s)	52, 494
BmsI	GCATC	2 cut(s)	485, 802
BpmI	CTGGAG	1 cut(s)	379
Bpu1102I	GCTNAGC	1 cut(s)	293
Bsa29I	ATCGAT	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	422, 751, 816
BsaWI	WCCGGW	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	731, 761
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 286
Bse1I	ACTGG	2 cut(s)	396, 801
Bse8I	GATNNNNATC	1 cut(s)	510
BseAI	TCCGGA	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	52, 494
BseCI	ATCGAT	1 cut(s)	113
BseDI	CCNNGG	3 cut(s)	422, 751, 816
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	259, 286
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	396, 801
BseSI	GKGCMC	1 cut(s)	824
BseXI	GCAGC	4 cut(s)	142, 339, 402, 581
BsgI	GTGCAG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	55, 531
BshVI	ATCGAT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	466
BslFI	GGGAC	1 cut(s)	719
BslI	CCNNNNNNNGG	2 cut(s)	259, 286
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	719
BsnI	GGCC	2 cut(s)	55, 531
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	710, 824
Bsp13I	TCCGGA	1 cut(s)	465
Bsp143I	GATC	4 cut(s)	40, 114, 728, 895
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	1 cut(s)	715
BspANI	GGCC	2 cut(s)	55, 531
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	113
BspEI	TCCGGA	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	735, 897
BspPI	GGATC	4 cut(s)	48, 736, 890, 903
BspTNI	GGTCTC	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	396, 801
BssECI	CCNNGG	3 cut(s)	422, 751, 816
BssMI	GATC	4 cut(s)	40, 114, 728, 895
BssT1I	CCWWGG	1 cut(s)	422
Bst2UI	CCWGG	2 cut(s)	52, 494
Bst4CI	ACNGT	3 cut(s)	220, 258, 347
Bst6I	CTCTTC	2 cut(s)	141, 423
BstDEI	CTNAG	2 cut(s)	59, 293
BstKTI	GATC	4 cut(s)	43, 117, 731, 898
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	4 cut(s)	40, 114, 728, 895
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	714
BstNI	CCWGG	2 cut(s)	52, 494
BstSCI	CCNGG	2 cut(s)	50, 492
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	824
BstV1I	GCAGC	4 cut(s)	142, 339, 402, 581
BstX2I	RGATCY	2 cut(s)	40, 895
BstYI	RGATCY	2 cut(s)	40, 895
Bsu15I	ATCGAT	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	55, 531
BsuTUI	ATCGAT	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	375, 403
CciI	TCATGA	1 cut(s)	357
Cfr13I	GGNCC	4 cut(s)	4, 631, 733, 764
ClaI	ATCGAT	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	265, 804
CviAII	CATG	3 cut(s)	268, 358, 718
CviQI	GTAC	2 cut(s)	265, 804
DdeI	CTNAG	2 cut(s)	59, 293
DpnI	GATC	4 cut(s)	42, 116, 730, 897
DpnII	GATC	4 cut(s)	40, 114, 728, 895
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	141, 423
EarI	CTCTTC	2 cut(s)	141, 423
Eco130I	CCWWGG	1 cut(s)	422
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	710
Eco31I	GGTCTC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	512
Eco47I	GGWCC	4 cut(s)	4, 631, 733, 764
Eco57I	CTGAAG	1 cut(s)	492
EcoRII	CCWGG	2 cut(s)	50, 492
EcoRV	GATATC	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	422
FaeI	CATG	3 cut(s)	271, 361, 721
FaqI	GGGAC	1 cut(s)	719
FatI	CATG	3 cut(s)	267, 357, 717
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	5 cut(s)	15, 131, 328, 391, 595
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	5 cut(s)	15, 131, 328, 391, 595
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	5 cut(s)	15, 131, 328, 391, 595
GsuI	CTGGAG	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	55, 531
HapII	CCGG	1 cut(s)	466
Hin1II	CATG	3 cut(s)	271, 361, 721
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	407
HpaI	GTTAAC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	466
HphI	GGTGA	2 cut(s)	193, 674
Hpy166II	GTNNAC	2 cut(s)	216, 665
Hpy188I	TCNGA	5 cut(s)	62, 81, 322, 385, 481
Hpy188III	TCNNGA	7 cut(s)	358, 415, 466, 762, 779, 899, 933
Hpy8I	GTNNAC	2 cut(s)	216, 665
HpyAV	CCTTC	5 cut(s)	280, 604, 653, 693, 886
HpyCH4III	ACNGT	3 cut(s)	220, 258, 347
HpyCH4V	TGCA	5 cut(s)	17, 100, 175, 188, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	714
HpyF3I	CTNAG	2 cut(s)	59, 293
Hsp92II	CATG	3 cut(s)	271, 361, 721
Kpn2I	TCCGGA	1 cut(s)	465
KspAI	GTTAAC	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	40, 114, 728, 895
LmnI	GCTCC	4 cut(s)	289, 365, 398, 592
Lsp1109I	GCAGC	4 cut(s)	142, 339, 402, 581
LweI	GCATC	2 cut(s)	485, 802
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	347, 538
MalI	GATC	4 cut(s)	42, 116, 730, 897
MboI	GATC	4 cut(s)	40, 114, 728, 895
MboII	GAAGA	6 cut(s)	158, 179, 440, 707, 873, 948
MflI	RGATCY	2 cut(s)	40, 895
MhlI	GDGCHC	2 cut(s)	710, 824
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	6 cut(s)	46, 170, 300, 690, 771, 857
MluNI	TGGCCA	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	9 cut(s)	66, 88, 120, 513, 537, 622, 757, 761, 811
Mox20I	TGGCCA	1 cut(s)	531
MroI	TCCGGA	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	3 cut(s)	45, 87, 215
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	1 cut(s)	14
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	2 cut(s)	52, 494
MvaI	CCWGG	2 cut(s)	52, 494
MwoI	GCNNNNNNNGC	1 cut(s)	714
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	4 cut(s)	40, 114, 728, 895
NlaIII	CATG	3 cut(s)	271, 361, 721
NlaIV	GGNNCC	2 cut(s)	735, 897
NmeAIII	GCCGAG	1 cut(s)	841
PagI	TCATGA	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	5 cut(s)	16, 132, 329, 392, 596
Ple19I	CGATCG	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	50, 492
PspGI	CCWGG	2 cut(s)	50, 492
PspN4I	GGNNCC	2 cut(s)	735, 897
PspPI	GGNCC	4 cut(s)	4, 631, 733, 764
PsuI	RGATCY	2 cut(s)	40, 895
PvuI	CGATCG	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	266, 805
RsaNI	GTAC	2 cut(s)	265, 804
SaqAI	TTAA	3 cut(s)	45, 87, 215
SatI	GCNGC	5 cut(s)	15, 131, 328, 391, 595
Sau3AI	GATC	4 cut(s)	40, 114, 728, 895
Sau96I	GGNCC	4 cut(s)	4, 631, 733, 764
ScaI	AGTACT	1 cut(s)	805
ScrFI	CCNGG	2 cut(s)	52, 494
SduI	GDGCHC	2 cut(s)	710, 824
SfaNI	GCATC	2 cut(s)	485, 802
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	4 cut(s)	4, 631, 733, 764
Sse9I	AATT	6 cut(s)	46, 170, 300, 690, 771, 857
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	715
SspMI	CTAG	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	2 cut(s)	50, 492
StyI	CCWWGG	1 cut(s)	422
TaaI	ACNGT	3 cut(s)	220, 258, 347
TaqI	TCGA	3 cut(s)	69, 113, 117
TaqII	GACCGA	1 cut(s)	721
TasI	AATT	6 cut(s)	46, 170, 300, 690, 771, 857
TatI	WGTACW	2 cut(s)	264, 803
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	45, 87, 215
Tru9I	TTAA	3 cut(s)	45, 87, 215
TscAI	CASTG	2 cut(s)	375, 403
TseI	GCWGC	5 cut(s)	14, 130, 327, 390, 594
TspDTI	ATGAA	3 cut(s)	374, 672, 747
TspRI	CASTG	2 cut(s)	375, 403
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	4 cut(s)	4, 631, 733, 764
XapI	RAATTY	1 cut(s)	857
XspI	CTAG	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.