Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Forward (+)

13078956 .. 13079921

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G32090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAAGAGGCTCTGTTGTTGGGTGGAACTAAGGCTACAAGTGATGAAGAAGCTGAAGTTGAAGATAGAGGGTTGCAGTTTTGATGACATGTATTTTGTGTTGCAGATACGAAACCATGGAGAAATTATTACTTGCACCAGCAGAGGAGATATCCTATCAAGAAAAAGAAAAACTTTGACCACATCTCTGATTCCATTACTAGTGATTACCGTTTGCGCACTTAGATGCATAGAGGTAGTAGAAAAGGTCAAGGTGCATCCTTTATGGCAAGCGACTCCCATGGTTCAGAGAAGTGTGGAGGATCAGTCCGTGTTAGTTGCAACTTATGAGGGTGAACACAACCATCCAATGCCATCGCAAATGGATTCAAACAATGGCTTAAACCGCTACATCTCTCATGGTGGTTCTGCTTCAACACCCGTTGCAGCCAACAAAAGAAGTAGCTTGACTGAGCCGACTGATAGACCGTTAATAGTATACTCAATGAAGAAGAGAAGAGAGGCACGTGCGACTGAGATGGCAGATGAGGAGCACGTGAGTGGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

182

Amino Acids

20.61

Weight (kDa)

9.08

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	74
AcvI	CACGTG	2 cut(s)	506, 535
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	61, 369, 414
AhlI	ACTAGT	1 cut(s)	199
AleI	CACNNNNGTG	1 cut(s)	537
AluBI	AGCT	2 cut(s)	52, 444
AluI	AGCT	2 cut(s)	52, 444
Alw21I	GWGCWC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	425
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	344
BbrPI	CACGTG	2 cut(s)	506, 535
Bbv12I	GWGCWC	1 cut(s)	534
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	3 cut(s)	351, 361, 511
BcuI	ACTAGT	1 cut(s)	199
BfaI	CTAG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
BmsI	GCATC	2 cut(s)	215, 265
BsaAI	YACGTR	2 cut(s)	506, 535
BsaJI	CCNNGG	2 cut(s)	115, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
BseDI	CCNNGG	2 cut(s)	115, 279
BseGI	GGATG	2 cut(s)	256, 343
BseMII	CTCAG	2 cut(s)	441, 504
BseRI	GAGGAG	2 cut(s)	159, 542
BseXI	GCAGC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	534
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	1 cut(s)	301
Bsp19I	CCATGG	2 cut(s)	115, 279
BspACI	CCGC	1 cut(s)	385
BspCNI	CTCAG	2 cut(s)	442, 505
BspPI	GGATC	1 cut(s)	309
BssECI	CCNNGG	2 cut(s)	115, 279
BssMI	GATC	1 cut(s)	301
BssNAI	GTATAC	1 cut(s)	478
BssT1I	CCWWGG	2 cut(s)	115, 279
Bst1107I	GTATAC	1 cut(s)	478
Bst4CI	ACNGT	2 cut(s)	211, 468
Bst6I	CTCTTC	2 cut(s)	485, 490
BstBAI	YACGTR	2 cut(s)	506, 535
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	29, 221, 450, 513
BstDSI	CCRYGG	2 cut(s)	115, 279
BstF5I	GGATG	2 cut(s)	256, 343
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	1 cut(s)	304
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	437
BstZ17I	GTATAC	1 cut(s)	478
BtgI	CCRYGG	2 cut(s)	115, 279
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	256, 343
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	218
CviAII	CATG	4 cut(s)	88, 116, 280, 398
CviJI	RGCY	7 cut(s)	10, 34, 52, 378, 428, 444, 454
CviKI_1	RGCY	7 cut(s)	10, 34, 52, 378, 428, 444, 454
DdeI	CTNAG	4 cut(s)	29, 221, 450, 513
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	485, 490
EarI	CTCTTC	2 cut(s)	485, 490
Eco130I	CCWWGG	2 cut(s)	115, 279
Eco32I	GATATC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	74
Eco72I	CACGTG	2 cut(s)	506, 535
EcoRV	GATATC	1 cut(s)	151
EcoT14I	CCWWGG	2 cut(s)	115, 279
EcoT22I	ATGCAT	1 cut(s)	230
ErhI	CCWWGG	2 cut(s)	115, 279
FaeI	CATG	4 cut(s)	91, 119, 283, 401
FaiI	YATR	8 cut(s)	89, 117, 230, 265, 281, 327, 399, 478
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FatI	CATG	4 cut(s)	87, 115, 279, 397
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	2 cut(s)	243, 330
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	1 cut(s)	200
FspI	TGCGCA	1 cut(s)	217
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	1 cut(s)	426
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	4 cut(s)	91, 119, 283, 401
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HinfI	GANTC	3 cut(s)	190, 274, 365
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	335, 478
Hpy188I	TCNGA	2 cut(s)	189, 288
Hpy188III	TCNNGA	1 cut(s)	159
Hpy8I	GTNNAC	2 cut(s)	335, 478
HpyCH4III	ACNGT	2 cut(s)	211, 468
HpyCH4IV	ACGT	2 cut(s)	505, 534
HpyCH4V	TGCA	7 cut(s)	75, 103, 135, 228, 256, 320, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	4 cut(s)	29, 221, 450, 513
HpySE526I	ACGT	2 cut(s)	505, 534
Hsp92II	CATG	4 cut(s)	91, 119, 283, 401
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	529
LpnPI	CCDG	1 cut(s)	151
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	2 cut(s)	215, 265
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	2 cut(s)	505, 534
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MboII	GAAGA	6 cut(s)	16, 58, 73, 499, 502, 507
MhlI	GDGCHC	1 cut(s)	534
MluCI	AATT	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	7 cut(s)	61, 137, 226, 292, 322, 493, 520
Mph1103I	ATGCAT	1 cut(s)	230
MseI	TTAA	2 cut(s)	380, 470
MslI	CAYNNNNRTG	2 cut(s)	223, 537
MwoI	GCNNNNNNNGC	1 cut(s)	384
NcoI	CCATGG	2 cut(s)	115, 279
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	4 cut(s)	91, 119, 283, 401
NsbI	TGCGCA	1 cut(s)	217
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	1 cut(s)	91
OliI	CACNNNNGTG	1 cut(s)	537
PciI	ACATGT	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	190, 365
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	268
PmaCI	CACGTG	2 cut(s)	506, 535
PmlI	CACGTG	2 cut(s)	506, 535
PpsI	GAGTC	1 cut(s)	268
Ppu21I	YACGTR	2 cut(s)	506, 535
PscI	ACATGT	1 cut(s)	87
PspCI	CACGTG	2 cut(s)	506, 535
PsrI	GAACNNNNNNTAC	2 cut(s)	18, 50
RseI	CAYNNNNRTG	2 cut(s)	223, 537
SaqAI	TTAA	2 cut(s)	380, 470
SatI	GCNGC	1 cut(s)	426
Sau3AI	GATC	1 cut(s)	301
SchI	GAGTC	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	534
SetI	ASST	7 cut(s)	54, 237, 249, 255, 446, 508, 537
SfaNI	GCATC	2 cut(s)	215, 265
SmiMI	CAYNNNNRTG	2 cut(s)	223, 537
SpeI	ACTAGT	1 cut(s)	199
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	1 cut(s)	200
StyI	CCWWGG	2 cut(s)	115, 279
TaaI	ACNGT	2 cut(s)	211, 468
TaiI	ACGT	2 cut(s)	508, 537
TasI	AATT	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	190, 365
Tru1I	TTAA	2 cut(s)	380, 470
Tru9I	TTAA	2 cut(s)	380, 470
TseI	GCWGC	1 cut(s)	425
TspDTI	ATGAA	3 cut(s)	17, 59, 500
TspGWI	ACGGA	1 cut(s)	298
XceI	RCATGY	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	477
XspI	CTAG	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.