Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Forward (+)

10629662 .. 10631413

Gene Structure 1752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGACTATGATCCCAACACCAATCCGTTCGACCTTCATTTCTCCGGTAAACTTCCGAAAAGAGAAGTCTCGGCTTCAGCTTCTAAAGTTGTAGAGAAGAAATGGTTAGTGAAAGATGAGAAGAGAAATATGCTACAAGATGAAATAAACCGGGTTAATTCGGAGAACAAGAAGCTAACCGAAATGTTAGCAAGAGTCTGTGAGAAGTACTATGCTCTTAATAATCTTATGGAGGAGTTGCAGAGTCGAAAGAGTCCTGAAAGTGTTAACTTTCAGAACAAACAGCTAACGGGGAAACGAAAACAAGAACTTGATGAGTTTGTTAGCTCCCCAATTGGACTCAGTCTCGGACCAATCGAGAACATCACCAACGATAAAGCGACGGTTTCAACCGCTTACTTTGCTGCTGAGAAGTCTGACACAAGCTTGACTGTGAAAGATGGATATCAATGGAGGAAATACGGGCAAAAGATTACGAGAGATAATCCATCTCCTAGAGCTTACTTCAGATGCTCGTTTTCACCGTCTTGTCTAGTCAAGAAGAAGGTGCAACGAAGTGCAGAAGATCCATCTTTCTTGGTAGCCACTTACGAAGGGACACATAACCACACCGGACCACATGCAAGTGTGTCCAGGACAGTGAAACTTGATCTAGTTCAAGGTGGGCTTGAACCAGTTGAGGAAAAGAAAGAGAGAGGGACGATTCAAGAGGTTTTGGTGCAACAAATGGCTTCTTCGTTGACCAAAGATCCTAAGTTCACTGCAGCTCTTGCGACTGCTATTTCCGGGAGATTGATAGAGCATTCAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

271

Amino Acids

30.58

Weight (kDa)

9.14

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	146 - 203	3.6e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	393
AclWI	GGATC	3 cut(s)	5, 560, 743
AcuI	CTGAAG	2 cut(s)	60, 490
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	390, 659, 671, 707, 807
AjnI	CCWGG	1 cut(s)	632
AluBI	AGCT	7 cut(s)	80, 175, 286, 327, 426, 500, 767
AluI	AGCT	7 cut(s)	80, 175, 286, 327, 426, 500, 767
Alw26I	GTCTC	2 cut(s)	73, 350
AlwI	GGATC	3 cut(s)	5, 560, 743
ApeKI	GCWGC	2 cut(s)	404, 764
AspS9I	GGNCC	2 cut(s)	350, 614
AsuC2I	CCSGG	2 cut(s)	152, 787
AsuHPI	GGTGA	2 cut(s)	358, 513
AvaII	GGWCC	2 cut(s)	350, 614
BbvI	GCAGC	2 cut(s)	391, 776
BccI	CCATC	3 cut(s)	434, 496, 577
BciT130I	CCWGG	1 cut(s)	634
BcnI	CCSGG	2 cut(s)	152, 787
BcoDI	GTCTC	2 cut(s)	73, 350
BfaI	CTAG	3 cut(s)	495, 533, 653
BfmI	CTRYAG	1 cut(s)	762
BisI	GCNGC	2 cut(s)	405, 765
BlsI	GCNGC	2 cut(s)	406, 766
BmcAI	AGTACT	1 cut(s)	209
Bme1390I	CCNGG	3 cut(s)	152, 634, 787
Bme18I	GGWCC	2 cut(s)	350, 614
BmgT120I	GGNCC	2 cut(s)	350, 614
BmrFI	CCNGG	3 cut(s)	152, 634, 787
BmsI	GCATC	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	152, 787
BsaBI	GATNNNNATC	1 cut(s)	444
BsaWI	WCCGGW	2 cut(s)	44, 611
Bse1I	ACTGG	1 cut(s)	674
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	1 cut(s)	634
BseJI	GATNNNNATC	1 cut(s)	444
BseMII	CTCAG	2 cut(s)	355, 399
BseNI	ACTGG	1 cut(s)	674
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	391, 776
BsgI	GTGCAG	1 cut(s)	579
BsiSI	CCGG	4 cut(s)	45, 151, 612, 786
BslFI	GGGAC	2 cut(s)	610, 712
BsmAI	GTCTC	2 cut(s)	73, 350
BsmFI	GGGAC	2 cut(s)	610, 712
BsmI	GAATGC	1 cut(s)	802
Bsp143I	GATC	4 cut(s)	10, 565, 649, 748
BspACI	CCGC	1 cut(s)	393
BspCNI	CTCAG	2 cut(s)	354, 400
BspMAI	CTGCAG	1 cut(s)	766
BspPI	GGATC	3 cut(s)	5, 560, 743
BsrI	ACTGG	1 cut(s)	674
BssMI	GATC	4 cut(s)	10, 565, 649, 748
Bst2UI	CCWGG	1 cut(s)	634
Bst4CI	ACNGT	4 cut(s)	385, 433, 525, 640
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstDEI	CTNAG	3 cut(s)	341, 408, 753
BstKTI	GATC	4 cut(s)	13, 568, 652, 751
BstMAI	GTCTC	2 cut(s)	73, 350
BstMBI	GATC	4 cut(s)	10, 565, 649, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 770
BstNI	CCWGG	1 cut(s)	634
BstNSI	RCATGY	1 cut(s)	623
BstSCI	CCNGG	3 cut(s)	150, 632, 785
BstSFI	CTRYAG	1 cut(s)	762
BstV1I	GCAGC	2 cut(s)	391, 776
BstX2I	RGATCY	2 cut(s)	565, 748
BstYI	RGATCY	2 cut(s)	565, 748
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	2 cut(s)	645, 759
Cfr13I	GGNCC	2 cut(s)	350, 614
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	2 cut(s)	620, 813
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	3 cut(s)	341, 408, 753
DpnI	GATC	4 cut(s)	12, 567, 651, 750
DpnII	GATC	4 cut(s)	10, 565, 649, 748
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	446
Eco47I	GGWCC	2 cut(s)	350, 614
Eco57I	CTGAAG	2 cut(s)	60, 490
EcoRII	CCWGG	1 cut(s)	632
EcoRV	GATATC	1 cut(s)	446
FaeI	CATG	2 cut(s)	623, 816
FaiI	YATR	7 cut(s)	9, 131, 213, 230, 603, 621, 814
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FaqI	GGGAC	2 cut(s)	610, 712
FatI	CATG	2 cut(s)	619, 812
Fnu4HI	GCNGC	2 cut(s)	405, 765
Fsp4HI	GCNGC	2 cut(s)	405, 765
FspBI	CTAG	3 cut(s)	495, 533, 653
GluI	GCNGC	2 cut(s)	405, 765
HapII	CCGG	4 cut(s)	45, 151, 612, 786
Hin1II	CATG	2 cut(s)	623, 816
HincII	GTYRAC	2 cut(s)	268, 741
HindII	GTYRAC	2 cut(s)	268, 741
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	5 cut(s)	195, 244, 253, 339, 703
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	4 cut(s)	45, 151, 612, 786
HphI	GGTGA	2 cut(s)	358, 513
Hpy166II	GTNNAC	4 cut(s)	50, 268, 741, 759
Hpy188I	TCNGA	6 cut(s)	57, 163, 276, 350, 418, 509
Hpy188III	TCNNGA	5 cut(s)	257, 358, 538, 707, 807
Hpy8I	GTNNAC	4 cut(s)	50, 268, 741, 759
Hpy99I	CGWCG	1 cut(s)	385
HpyAV	CCTTC	3 cut(s)	44, 538, 587
HpyCH4III	ACNGT	4 cut(s)	385, 433, 525, 640
HpyCH4V	TGCA	6 cut(s)	241, 550, 560, 623, 721, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 770
HpyF3I	CTNAG	3 cut(s)	341, 408, 753
Hsp92II	CATG	2 cut(s)	623, 816
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	10, 565, 649, 748
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	8 cut(s)	58, 164, 270, 619, 625, 646, 687, 799
Lsp1109I	GCAGC	2 cut(s)	391, 776
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	3 cut(s)	495, 533, 653
MalI	GATC	4 cut(s)	12, 567, 651, 750
MboI	GATC	4 cut(s)	10, 565, 649, 748
MboII	GAAGA	5 cut(s)	109, 133, 553, 575, 726
MfeI	CAATTG	1 cut(s)	333
MflI	RGATCY	2 cut(s)	565, 748
MluCI	AATT	2 cut(s)	157, 333
MlyI	GAGTC	4 cut(s)	204, 253, 262, 333
MnlI	CCTC	5 cut(s)	226, 447, 673, 689, 703
MseI	TTAA	3 cut(s)	156, 219, 267
MslI	CAYNNNNRTG	1 cut(s)	624
MspI	CCGG	4 cut(s)	45, 151, 612, 786
MspR9I	CCNGG	3 cut(s)	152, 634, 787
MunI	CAATTG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	802
MvaI	CCWGG	1 cut(s)	634
MwoI	GCNNNNNNNGC	2 cut(s)	401, 770
NciI	CCSGG	2 cut(s)	152, 787
NdeII	GATC	4 cut(s)	10, 565, 649, 748
NlaIII	CATG	2 cut(s)	623, 816
NmeAIII	GCCGAG	1 cut(s)	50
NspI	RCATGY	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 521
PctI	GAATGC	1 cut(s)	802
PfeI	GAWTC	1 cut(s)	703
PflFI	GACNNNGTC	1 cut(s)	342
PfoI	TCCNGGA	2 cut(s)	632, 785
PkrI	GCNGC	2 cut(s)	406, 766
PleI	GAGTC	4 cut(s)	203, 252, 261, 333
PpsI	GAGTC	4 cut(s)	203, 252, 261, 333
Psp6I	CCWGG	1 cut(s)	632
PspGI	CCWGG	1 cut(s)	632
PspPI	GGNCC	2 cut(s)	350, 614
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	2 cut(s)	565, 748
PsyI	GACNNNGTC	1 cut(s)	342
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	624
SaqAI	TTAA	3 cut(s)	156, 219, 267
SatI	GCNGC	2 cut(s)	405, 765
Sau3AI	GATC	4 cut(s)	10, 565, 649, 748
Sau96I	GGNCC	2 cut(s)	350, 614
ScaI	AGTACT	1 cut(s)	209
SchI	GAGTC	4 cut(s)	204, 253, 262, 333
ScrFI	CCNGG	3 cut(s)	152, 634, 787
SfaNI	GCATC	1 cut(s)	500
SfcI	CTRYAG	1 cut(s)	762
SinI	GGWCC	2 cut(s)	350, 614
SmiMI	CAYNNNNRTG	1 cut(s)	624
Sse9I	AATT	2 cut(s)	157, 333
SsiI	CCGC	1 cut(s)	393
SspMI	CTAG	3 cut(s)	495, 533, 653
StyD4I	CCNGG	3 cut(s)	150, 632, 785
TaaI	ACNGT	4 cut(s)	385, 433, 525, 640
TaqI	TCGA	3 cut(s)	30, 247, 357
TasI	AATT	2 cut(s)	157, 333
TatI	WGTACW	1 cut(s)	207
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	3 cut(s)	156, 219, 267
Tru9I	TTAA	3 cut(s)	156, 219, 267
TscAI	CASTG	2 cut(s)	645, 766
TseI	GCWGC	2 cut(s)	404, 764
TspDTI	ATGAA	2 cut(s)	26, 156
TspGWI	ACGGA	1 cut(s)	15
TspRI	CASTG	2 cut(s)	645, 766
Tth111I	GACNNNGTC	1 cut(s)	342
VpaK11BI	GGWCC	2 cut(s)	350, 614
XceI	RCATGY	1 cut(s)	623
XspI	CTAG	3 cut(s)	495, 533, 653
ZrmI	AGTACT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.