Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Forward (+)

27209201 .. 27211741

Gene Structure 2541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1223100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGACCATTCAGCTGCATATGATGATGATACTACTTTGGATCTTAATTCCAGGCCTCTCAGACTTTTCGATGATACTCCGATGATTAAACAAGAGGTGCATAGCAAAATATCGATCGACTTTGGGAGGCAGCTTTCCTCTACAGAAGAGAGTGGTCGTCTATTGGAAGAATTGCACCGGGTGAGTGCCGAGAACAAGAAGCTAACCGAAATGTTGACGGTGATGGGAGAGAACTACAATGCTTTGAGAAGCCAACTGTTGGAGTACATGAGCAAGAACCCAGAGAAGGAGCTTAGCCCAATTTCAAAGAAAAGAAAGTCTGAAAGCAGCAACAACAACACCAACAGTAACAATATCATGAATGGAGCAGTGAATGGAAACTCCGAAAGCAGCTCCAGTGATGGCGAATCGTTCAAGAAACCAAGGGAAGAGACCATCAAGGCAAAGGTTTCAAGGATTTATGTCCGGACCGAAGCATCTGATACGACAAGCCTGGTTGTGAAAGATGGATATCAATGGAGGAAATATGGCCAAAAAGTTACGAGGGATAATCCTTGTCCTAGAGCTTACTTCAAATGCTCTTTTGCTCCAAGCTGCCCTGTCAAAAAGAAGGTTCAAAGAAGTGTTGAGGACCAATCTATTTTGGTGGGAACTTATGAAGGTGAACACAACCACCCCAACCCTTCCCAAATTGAAGCAACATCGGGCTCAAACCGCTGCATGACCATAGGATCGGTCCCTTACTCAACCTCCCTTGGTTCATCTGGACCTACAATTACTCTTGACTTAACCAAATCCAAGTCCAGTACTGCTGATGCCGAGGGCACAAAAACAAGAACTGAAACACCTGAAGTTCGCAAATTTTTGGTTGAGCAGATGGCTTCTTCCTTGACGAAGGATCCCGATTTCACGAAAGCACTTGCAACAGCCATATCAGGAAGAATACTTCAACACAATACTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

322

Amino Acids

35.67

Weight (kDa)

8.2

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	168 - 226	5.6e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccIII	TCCGGA	1 cut(s)	465
AciI	CCGC	1 cut(s)	715
AclWI	GGATC	4 cut(s)	48, 739, 893, 906
AcoI	YGGCCR	1 cut(s)	529
AcsI	RAATTY	1 cut(s)	860
AcuI	CTGAAG	1 cut(s)	870
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	266, 808
AfiI	CCNNNNNNNGG	2 cut(s)	259, 286
AgsI	TTSAA	7 cut(s)	306, 415, 453, 574, 617, 695, 950
AjnI	CCWGG	2 cut(s)	50, 492
AluBI	AGCT	7 cut(s)	14, 133, 202, 292, 393, 566, 594
AluI	AGCT	7 cut(s)	14, 133, 202, 292, 393, 566, 594
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	4 cut(s)	48, 739, 893, 906
Aor13HI	TCCGGA	1 cut(s)	465
AoxI	GGCC	2 cut(s)	53, 529
ApeKI	GCWGC	6 cut(s)	14, 130, 327, 390, 594, 717
ApoI	RAATTY	1 cut(s)	860
AspS9I	GGNCC	5 cut(s)	4, 468, 631, 736, 767
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	3 cut(s)	193, 232, 674
AvaII	GGWCC	5 cut(s)	4, 468, 631, 736, 767
BaeGI	GKGCMC	1 cut(s)	827
BalI	TGGCCA	1 cut(s)	531
BamHI	GGATCC	1 cut(s)	898
BanII	GRGCYC	1 cut(s)	710
BbvI	GCAGC	5 cut(s)	142, 339, 402, 581, 704
BccI	CCATC	5 cut(s)	217, 395, 443, 500, 871
BciT130I	CCWGG	2 cut(s)	52, 494
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	141
BisI	GCNGC	6 cut(s)	15, 131, 328, 391, 595, 718
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	6 cut(s)	16, 132, 329, 392, 596, 719
BmcAI	AGTACT	1 cut(s)	808
Bme1390I	CCNGG	3 cut(s)	52, 179, 494
Bme18I	GGWCC	5 cut(s)	4, 468, 631, 736, 767
BmgT120I	GGNCC	5 cut(s)	4, 468, 631, 736, 767
BmiI	GGNNCC	2 cut(s)	738, 900
BmrFI	CCNGG	3 cut(s)	52, 179, 494
BmsI	GCATC	2 cut(s)	485, 805
BpmI	CTGGAG	1 cut(s)	379
Bpu1102I	GCTNAGC	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	510
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	3 cut(s)	422, 754, 819
BsaWI	WCCGGW	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 286
Bse1I	ACTGG	2 cut(s)	396, 804
Bse8I	GATNNNNATC	1 cut(s)	510
BseAI	TCCGGA	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	52, 494
BseCI	ATCGAT	1 cut(s)	113
BseDI	CCNNGG	3 cut(s)	422, 754, 819
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	259, 286
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	396, 804
BseSI	GKGCMC	1 cut(s)	827
BseXI	GCAGC	5 cut(s)	142, 339, 402, 581, 704
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	55, 531
BshVI	ATCGAT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	178, 466
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	2 cut(s)	259, 286
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	2 cut(s)	55, 531
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	710, 827
Bsp13I	TCCGGA	1 cut(s)	465
Bsp143I	GATC	4 cut(s)	40, 114, 731, 898
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	1 cut(s)	715
BspANI	GGCC	2 cut(s)	55, 531
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	113
BspEI	TCCGGA	1 cut(s)	465
BspHI	TCATGA	1 cut(s)	357
BspLI	GGNNCC	2 cut(s)	738, 900
BspPI	GGATC	4 cut(s)	48, 739, 893, 906
BspTNI	GGTCTC	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	396, 804
BssECI	CCNNGG	3 cut(s)	422, 754, 819
BssMI	GATC	4 cut(s)	40, 114, 731, 898
BssT1I	CCWWGG	2 cut(s)	422, 754
Bst2UI	CCWGG	2 cut(s)	52, 494
Bst4CI	ACNGT	3 cut(s)	220, 258, 347
Bst6I	CTCTTC	2 cut(s)	141, 423
BstDEI	CTNAG	2 cut(s)	59, 293
BstKTI	GATC	4 cut(s)	43, 117, 734, 901
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	4 cut(s)	40, 114, 731, 898
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	1 cut(s)	714
BstNI	CCWGG	2 cut(s)	52, 494
BstSCI	CCNGG	3 cut(s)	50, 177, 492
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	827
BstV1I	GCAGC	5 cut(s)	142, 339, 402, 581, 704
BstX2I	RGATCY	2 cut(s)	40, 898
BstYI	RGATCY	2 cut(s)	40, 898
Bsu15I	ATCGAT	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	55, 531
BsuTUI	ATCGAT	1 cut(s)	113
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	375, 403
CciI	TCATGA	1 cut(s)	357
Cfr13I	GGNCC	5 cut(s)	4, 468, 631, 736, 767
ClaI	ATCGAT	1 cut(s)	113
CpoI	CGGWCCG	1 cut(s)	468
Csp6I	GTAC	2 cut(s)	265, 807
CspI	CGGWCCG	1 cut(s)	468
CviAII	CATG	3 cut(s)	268, 358, 721
CviQI	GTAC	2 cut(s)	265, 807
DdeI	CTNAG	2 cut(s)	59, 293
DpnI	GATC	4 cut(s)	42, 116, 733, 900
DpnII	GATC	4 cut(s)	40, 114, 731, 898
DraIII	CACNNNGTG	1 cut(s)	181
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	2 cut(s)	141, 423
EarI	CTCTTC	2 cut(s)	141, 423
Eco130I	CCWWGG	2 cut(s)	422, 754
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	710
Eco31I	GGTCTC	1 cut(s)	425
Eco32I	GATATC	1 cut(s)	512
Eco47I	GGWCC	5 cut(s)	4, 468, 631, 736, 767
Eco57I	CTGAAG	1 cut(s)	870
EcoRII	CCWGG	2 cut(s)	50, 492
EcoRV	GATATC	1 cut(s)	512
EcoT14I	CCWWGG	2 cut(s)	422, 754
EcoT38I	GRGCYC	1 cut(s)	710
ErhI	CCWWGG	2 cut(s)	422, 754
FaeI	CATG	3 cut(s)	271, 361, 724
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	3 cut(s)	267, 357, 720
FauNDI	CATATG	1 cut(s)	19
Fnu4HI	GCNGC	6 cut(s)	15, 131, 328, 391, 595, 718
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	6 cut(s)	15, 131, 328, 391, 595, 718
FspBI	CTAG	1 cut(s)	561
GluI	GCNGC	6 cut(s)	15, 131, 328, 391, 595, 718
GsuI	CTGGAG	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	55, 531
HapII	CCGG	2 cut(s)	178, 466
Hin1II	CATG	3 cut(s)	271, 361, 724
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	2 cut(s)	178, 466
HphI	GGTGA	3 cut(s)	193, 232, 674
Hpy166II	GTNNAC	2 cut(s)	216, 665
Hpy188I	TCNGA	5 cut(s)	62, 81, 322, 385, 481
Hpy188III	TCNNGA	8 cut(s)	358, 415, 466, 765, 782, 902, 910, 936
Hpy8I	GTNNAC	2 cut(s)	216, 665
HpyAV	CCTTC	5 cut(s)	280, 604, 653, 693, 889
HpyCH4III	ACNGT	3 cut(s)	220, 258, 347
HpyCH4V	TGCA	5 cut(s)	17, 100, 175, 720, 923
HpyF10VI	GCNNNNNNNGC	1 cut(s)	714
HpyF3I	CTNAG	2 cut(s)	59, 293
Hsp92II	CATG	3 cut(s)	271, 361, 724
Kpn2I	TCCGGA	1 cut(s)	465
Kzo9I	GATC	4 cut(s)	40, 114, 731, 898
LmnI	GCTCC	4 cut(s)	289, 365, 398, 592
Lsp1109I	GCAGC	5 cut(s)	142, 339, 402, 581, 704
LweI	GCATC	2 cut(s)	485, 805
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	2 cut(s)	347, 538
MalI	GATC	4 cut(s)	42, 116, 733, 900
MboI	GATC	4 cut(s)	40, 114, 731, 898
MboII	GAAGA	5 cut(s)	158, 179, 440, 876, 951
MflI	RGATCY	2 cut(s)	40, 898
MhlI	GDGCHC	2 cut(s)	710, 827
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	6 cut(s)	46, 170, 300, 690, 774, 860
MluNI	TGGCCA	1 cut(s)	531
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	9 cut(s)	66, 88, 120, 148, 513, 537, 622, 760, 814
Mox20I	TGGCCA	1 cut(s)	531
MroI	TCCGGA	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	531
MseI	TTAA	3 cut(s)	45, 87, 788
Msp20I	TGGCCA	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	14, 717
MspI	CCGG	2 cut(s)	178, 466
MspR9I	CCNGG	3 cut(s)	52, 179, 494
MvaI	CCWGG	2 cut(s)	52, 494
MwoI	GCNNNNNNNGC	1 cut(s)	714
NciI	CCSGG	1 cut(s)	179
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	4 cut(s)	40, 114, 731, 898
NlaIII	CATG	3 cut(s)	271, 361, 724
NlaIV	GGNNCC	2 cut(s)	738, 900
NmeAIII	GCCGAG	2 cut(s)	214, 844
PagI	TCATGA	1 cut(s)	357
PceI	AGGCCT	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	407
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	6 cut(s)	16, 132, 329, 392, 596, 719
Ple19I	CGATCG	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	50, 492
PspGI	CCWGG	2 cut(s)	50, 492
PspN4I	GGNNCC	2 cut(s)	738, 900
PspPI	GGNCC	5 cut(s)	4, 468, 631, 736, 767
PsuI	RGATCY	2 cut(s)	40, 898
PvuI	CGATCG	1 cut(s)	117
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	2 cut(s)	266, 808
RsaNI	GTAC	2 cut(s)	265, 807
Rsr2I	CGGWCCG	1 cut(s)	468
RsrII	CGGWCCG	1 cut(s)	468
SaqAI	TTAA	3 cut(s)	45, 87, 788
SatI	GCNGC	6 cut(s)	15, 131, 328, 391, 595, 718
Sau3AI	GATC	4 cut(s)	40, 114, 731, 898
Sau96I	GGNCC	5 cut(s)	4, 468, 631, 736, 767
ScaI	AGTACT	1 cut(s)	808
ScrFI	CCNGG	3 cut(s)	52, 179, 494
SduI	GDGCHC	2 cut(s)	710, 827
SfaNI	GCATC	2 cut(s)	485, 805
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	5 cut(s)	4, 468, 631, 736, 767
Sse9I	AATT	6 cut(s)	46, 170, 300, 690, 774, 860
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	715
SspMI	CTAG	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	3 cut(s)	50, 177, 492
StyI	CCWWGG	2 cut(s)	422, 754
TaaI	ACNGT	3 cut(s)	220, 258, 347
TaqI	TCGA	3 cut(s)	69, 113, 117
TaqII	GACCGA	2 cut(s)	485, 724
TasI	AATT	6 cut(s)	46, 170, 300, 690, 774, 860
TatI	WGTACW	2 cut(s)	264, 806
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	45, 87, 788
Tru9I	TTAA	3 cut(s)	45, 87, 788
TscAI	CASTG	2 cut(s)	375, 403
TseI	GCWGC	6 cut(s)	14, 130, 327, 390, 594, 717
TspDTI	ATGAA	3 cut(s)	374, 672, 750
TspRI	CASTG	2 cut(s)	375, 403
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	5 cut(s)	4, 468, 631, 736, 767
XapI	RAATTY	1 cut(s)	860
XspI	CTAG	1 cut(s)	561
ZrmI	AGTACT	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.