Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Reverse (-)

55550010 .. 55551744

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG384200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGACTACTCATCAGCTGCTGCGTATGATACTTCTCTGGATCTTAACACCAGGCCTCTCCGGCTTTTCGATGATTCTCCTCCGAGTGGAGCTTTGGTAGAGGAATTGCACAGGGTGAGTACCGAAAACAAGAAGCTGACTGAAATGTTGACGGTGATGGGTGAGAGCTACAATGCTTTGAGAAGCCAATTGTTGGAGTACATGAGCAAGAACCCAGAGAAGGAGCTCAGCCCGATATCCAAGAAAAGAAAGTCTGAAAGTAGTAACAACAACAACAACAACAACAGTGCTAACAACATCCTTAATGGCATCAACAATGGAAACTCTGAGAGCAGCTCCAGTGATGGAGAATCATGCAAGAAGCCAAGGGAAGAAACCATCAAGGCCAAAATTTATAGGTCTTATGTCAGGACCGAACCATCCGATACAACAAGCTTGGTTGTCAAGGATGGGTACCAATGGAGAAAATATGGTCAAAAAGTTACAAGGGACAATCCTTGTCCTAGAGCATACTTCAAGTGCTCTTTTGCTCCAACCTGCCCTGTCAAAAAGAAGGTTCAGAGAAGTGTTGAGGACCAATCAATTCTGGTGGCAACTTATGAAGGTGAACACAACCATCCCAATCCTTCTCAACTTGAAGCATCATCGGGCTCAAACCGCTGCATGACCTTAGGATCAGTCCCCTGCTCAACCTCTCTTGGCACATCCGGACCAACCATCACTCTTGACTTGACAAAATCCAAGTCCAATACTTCTGATACCAAGAGCCCGAAACCAAGAACTGAAACACCGGAAGTTCGAAAGCTTTTGGTGGAACAGATGGCGTCTTCCTTGACCAAAGACCCCAACTTCACAAAAGCACTTGCAGCAGCCATTTCAGGAAGATTTCTTCAGCACGATACTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

302

Amino Acids

33.4

Weight (kDa)

8.87

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	149 - 207	1.6e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	545
Acc65I	GGTACC	1 cut(s)	453
AccB1I	GGYRCC	1 cut(s)	453
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccIII	TCCGGA	1 cut(s)	707
AciI	CCGC	1 cut(s)	658
AclWI	GGATC	2 cut(s)	48, 682
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	875
AcyI	GRCGYC	1 cut(s)	824
AdeI	CACNNNGTG	1 cut(s)	115
AfaI	GTAC	3 cut(s)	121, 200, 455
AfiI	CCNNNNNNNGG	3 cut(s)	86, 193, 220
AgsI	TTSAA	2 cut(s)	517, 638
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	8 cut(s)	17, 92, 136, 168, 226, 336, 435, 805
AluI	AGCT	8 cut(s)	17, 92, 136, 168, 226, 336, 435, 805
Alw21I	GWGCWC	2 cut(s)	228, 524
AlwI	GGATC	2 cut(s)	48, 682
AlwNI	CAGNNNCTG	1 cut(s)	20
Aor13HI	TCCGGA	1 cut(s)	707
AoxI	GGCC	2 cut(s)	53, 384
ApeKI	GCWGC	6 cut(s)	17, 20, 333, 660, 866, 869
ApoI	RAATTY	1 cut(s)	390
ArsI	GACNNNNNNTTYG	2 cut(s)	728, 760
Asp718I	GGTACC	1 cut(s)	453
AspS9I	GGNCC	3 cut(s)	411, 574, 710
AsuHPI	GGTGA	4 cut(s)	127, 166, 173, 617
AsuII	TTCGAA	1 cut(s)	799
AvaII	GGWCC	3 cut(s)	411, 574, 710
AxyI	CCTNAGG	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	453
BanII	GRGCYC	3 cut(s)	228, 653, 770
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	2 cut(s)	228, 524
BbvI	GCAGC	6 cut(s)	4, 7, 345, 647, 878, 881
BccI	CCATC	8 cut(s)	151, 338, 386, 427, 443, 624, 725, 814
BciT130I	CCWGG	1 cut(s)	52
BfaI	CTAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	545
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	6 cut(s)	18, 21, 334, 661, 867, 870
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	6 cut(s)	19, 22, 335, 662, 868, 871
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	3 cut(s)	411, 574, 710
BmgT120I	GGNCC	3 cut(s)	411, 574, 710
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	2 cut(s)	318, 650
BpiI	GAAGAC	1 cut(s)	819
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpmI	CTGGAG	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	227
Bpu14I	TTCGAA	1 cut(s)	799
BsaHI	GRCGYC	1 cut(s)	824
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	2 cut(s)	707, 790
BsaXI	ACNNNNNCTCC	2 cut(s)	81, 111
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 193, 220
Bse1I	ACTGG	1 cut(s)	339
Bse21I	CCTNAGG	1 cut(s)	670
BseAI	TCCGGA	1 cut(s)	707
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	5 cut(s)	297, 419, 454, 616, 704
BseLI	CCNNNNNNNGG	3 cut(s)	86, 193, 220
BseMII	CTCAG	2 cut(s)	241, 318
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	6 cut(s)	4, 7, 345, 647, 878, 881
BshFI	GGCC	2 cut(s)	55, 386
BshNI	GGYRCC	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	228, 524
BsiSI	CCGG	3 cut(s)	61, 708, 791
BslFI	GGGAC	2 cut(s)	503, 665
BslI	CCNNNNNNNGG	3 cut(s)	86, 193, 220
BsmFI	GGGAC	2 cut(s)	503, 665
BsnI	GGCC	2 cut(s)	55, 386
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	4 cut(s)	228, 524, 653, 770
Bsp13I	TCCGGA	1 cut(s)	707
Bsp143I	GATC	2 cut(s)	40, 674
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	1 cut(s)	658
BspANI	GGCC	2 cut(s)	55, 386
BspCNI	CTCAG	2 cut(s)	240, 319
BspEI	TCCGGA	1 cut(s)	707
BspLI	GGNNCC	1 cut(s)	455
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	48, 682
BspT104I	TTCGAA	1 cut(s)	799
BspT107I	GGYRCC	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	2 cut(s)	40, 674
BssNI	GRCGYC	1 cut(s)	824
BssT1I	CCWWGG	1 cut(s)	365
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	154, 287
BstACI	GRCGYC	1 cut(s)	824
BstBI	TTCGAA	1 cut(s)	799
BstDEI	CTNAG	3 cut(s)	227, 327, 670
BstF5I	GGATG	5 cut(s)	297, 419, 454, 616, 704
BstKTI	GATC	2 cut(s)	43, 677
BstMBI	GATC	2 cut(s)	40, 674
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 657, 866
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	6 cut(s)	4, 7, 345, 647, 878, 881
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	670
BsuRI	GGCC	2 cut(s)	55, 386
BtsCI	GGATG	5 cut(s)	297, 419, 454, 616, 704
BtsIMutI	CAGTG	2 cut(s)	292, 346
BveI	ACCTGC	1 cut(s)	545
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	411, 574, 710
CseI	GACGC	1 cut(s)	813
Csp6I	GTAC	3 cut(s)	120, 199, 454
CspCI	CAANNNNNGTGG	2 cut(s)	570, 605
CviAII	CATG	3 cut(s)	202, 354, 664
CviQI	GTAC	3 cut(s)	120, 199, 454
DdeI	CTNAG	3 cut(s)	227, 327, 670
DpnI	GATC	2 cut(s)	42, 676
DpnII	GATC	2 cut(s)	40, 674
DraIII	CACNNNGTG	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	3 cut(s)	228, 653, 770
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	3 cut(s)	411, 574, 710
Eco53kI	GAGCTC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	875
Eco81I	CCTNAGG	1 cut(s)	670
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	3 cut(s)	228, 653, 770
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	3 cut(s)	205, 357, 667
FaiI	YATR	9 cut(s)	27, 203, 355, 396, 405, 471, 511, 600, 665
FaqI	GGGAC	2 cut(s)	503, 665
FatI	CATG	3 cut(s)	201, 353, 663
Fnu4HI	GCNGC	6 cut(s)	18, 21, 334, 661, 867, 870
FokI	GGATG	5 cut(s)	284, 406, 461, 603, 691
FriOI	GRGCYC	3 cut(s)	228, 653, 770
Fsp4HI	GCNGC	6 cut(s)	18, 21, 334, 661, 867, 870
FspBI	CTAG	1 cut(s)	504
GluI	GCNGC	6 cut(s)	18, 21, 334, 661, 867, 870
GsuI	CTGGAG	1 cut(s)	322
HaeIII	GGCC	2 cut(s)	55, 386
HapII	CCGG	3 cut(s)	61, 708, 791
HgaI	GACGC	1 cut(s)	813
Hin1I	GRCGYC	1 cut(s)	824
Hin1II	CATG	3 cut(s)	205, 357, 667
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	2 cut(s)	433, 803
HinfI	GANTC	2 cut(s)	74, 350
HpaII	CCGG	3 cut(s)	61, 708, 791
HphI	GGTGA	4 cut(s)	127, 166, 173, 617
Hpy166II	GTNNAC	2 cut(s)	150, 608
Hpy188I	TCNGA	6 cut(s)	84, 256, 328, 424, 561, 757
Hpy188III	TCNNGA	5 cut(s)	38, 409, 708, 725, 879
Hpy8I	GTNNAC	2 cut(s)	150, 608
HpyAV	CCTTC	4 cut(s)	214, 547, 596, 636
HpyCH4III	ACNGT	2 cut(s)	154, 287
HpyCH4V	TGCA	4 cut(s)	109, 357, 663, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 657, 866
HpyF3I	CTNAG	3 cut(s)	227, 327, 670
Hsp92I	GRCGYC	1 cut(s)	824
Hsp92II	CATG	3 cut(s)	205, 357, 667
Kpn2I	TCCGGA	1 cut(s)	707
KpnI	GGTACC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	40, 674
LmnI	GCTCC	4 cut(s)	89, 223, 341, 535
Lsp1109I	GCAGC	6 cut(s)	4, 7, 345, 647, 878, 881
LweI	GCATC	2 cut(s)	318, 650
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	263, 481
MalI	GATC	2 cut(s)	42, 676
MboI	GATC	2 cut(s)	40, 674
MboII	GAAGA	4 cut(s)	383, 819, 881, 894
MfeI	CAATTG	1 cut(s)	188
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	4 cut(s)	228, 524, 653, 770
MluCI	AATT	4 cut(s)	104, 188, 390, 582
MmeI	TCCRAC	2 cut(s)	174, 557
MnlI	CCTC	5 cut(s)	66, 90, 94, 565, 703
MroI	TCCGGA	1 cut(s)	707
MseI	TTAA	2 cut(s)	45, 303
MspA1I	CMGCKG	2 cut(s)	17, 660
MspI	CCGG	3 cut(s)	61, 708, 791
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	61, 657, 866
NdeII	GATC	2 cut(s)	40, 674
NlaIII	CATG	3 cut(s)	205, 357, 667
NlaIV	GGNNCC	1 cut(s)	455
NspV	TTCGAA	1 cut(s)	799
PceI	AGGCCT	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	74, 350
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	6 cut(s)	19, 22, 335, 662, 868, 871
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	3 cut(s)	411, 574, 710
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	3 cut(s)	121, 200, 455
RsaNI	GTAC	3 cut(s)	120, 199, 454
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	45, 303
SatI	GCNGC	6 cut(s)	18, 21, 334, 661, 867, 870
Sau3AI	GATC	2 cut(s)	40, 674
Sau96I	GGNCC	3 cut(s)	411, 574, 710
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	4 cut(s)	228, 524, 653, 770
SfaNI	GCATC	2 cut(s)	318, 650
SfuI	TTCGAA	1 cut(s)	799
SinI	GGWCC	3 cut(s)	411, 574, 710
Sse9I	AATT	4 cut(s)	104, 188, 390, 582
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	658
SspMI	CTAG	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	154, 287
TaqI	TCGA	2 cut(s)	69, 799
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	4 cut(s)	104, 188, 390, 582
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	2 cut(s)	74, 350
Tru1I	TTAA	2 cut(s)	45, 303
Tru9I	TTAA	2 cut(s)	45, 303
TscAI	CASTG	2 cut(s)	292, 346
TseI	GCWGC	6 cut(s)	17, 20, 333, 660, 866, 869
TspDTI	ATGAA	1 cut(s)	615
TspRI	CASTG	2 cut(s)	292, 346
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	411, 574, 710
XapI	RAATTY	1 cut(s)	390
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.