Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Reverse (-)

53568687 .. 53570173

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG361500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTGCTTTGATTTACAGAGTGGAGCTTTGGTAGAGGAATTGCACAGGGTGAGTACCGAAAACAAGAAGCTGACTGAAATGTTGACGGTGATGGGTGAGAGCTACAATGCTTTGAGAAGCCAATTGTTGGAGTACATGAACAAGAACCCAGAGAAGGAGCTCAGCCCGATATCCAAGAAAAGAAAGTCTGAAAGTATTAACAACAACAACAACAACAACAACAACAGTGCTAACAACATCCTTAATGGCATCAACAATGGAAACTCTGAGAGCAGCTCCAGTGATGGAGAATCATGCAAGAAGCCAAGGGAAGAGACCATCAAGGCCAAAATTTATAGGTCTTATGTCAGGACCGAACCATCCGATACAACAAGCCTGGTTGTCAAGGATGGGTATCAATGGAGAAAATATGGTCAAAAAGTTACAAGGGACAATCCTTGTCCTAGAGCTTACTTCAAGTGCTCTTTTGCTCCAACCTGCCCTGTCAAAAAGAAGGTTCAGAGAAGTGTTGAGGACCAATCAATTCTGGTGGCAACTTATGAAGGTGAACACAACCATCCCAATCCTTCTCAACTTGAAGCATCATCGGGCTCAAACCGCTGCATGACCTTAGGATCAGTCCCTTGCTCAACCTCTCTTGGCACATCCGGACCAACCATCACTCTTGACTTGACAAAATCCAAGTCCAATACTTCTGATACCAAGAGCCCGAAACCAAGAACTGAAACACCAGAAGTTCGAAAGCTTTTGGTGGAACAGATGGCGTCTTCCTTGACCAAAGACCCCAACTTCACAAAAGCACTTGCAGCAGCCATTTCAGGAAGATTTCTTCAGCACGATACTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

282

Amino Acids

31.3

Weight (kDa)

9.04

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	129 - 187	1.5e-24	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccIII	TCCGGA	1 cut(s)	647
AciI	CCGC	1 cut(s)	598
AclWI	GGATC	1 cut(s)	622
AcsI	RAATTY	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	815
AcyI	GRCGYC	1 cut(s)	764
AdeI	CACNNNGTG	1 cut(s)	49
AfaI	GTAC	2 cut(s)	55, 134
AfiI	CCNNNNNNNGG	2 cut(s)	127, 154
AgsI	TTSAA	2 cut(s)	457, 578
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	7 cut(s)	26, 70, 102, 160, 276, 449, 745
AluI	AGCT	7 cut(s)	26, 70, 102, 160, 276, 449, 745
Alw21I	GWGCWC	2 cut(s)	162, 464
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	622
Aor13HI	TCCGGA	1 cut(s)	647
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	4 cut(s)	273, 600, 806, 809
ApoI	RAATTY	1 cut(s)	330
ArsI	GACNNNNNNTTYG	2 cut(s)	668, 700
AspS9I	GGNCC	3 cut(s)	351, 514, 650
AsuHPI	GGTGA	4 cut(s)	61, 100, 107, 557
AsuII	TTCGAA	1 cut(s)	739
AvaII	GGWCC	3 cut(s)	351, 514, 650
AxyI	CCTNAGG	1 cut(s)	610
BanII	GRGCYC	3 cut(s)	162, 593, 710
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	2 cut(s)	162, 464
BbvI	GCAGC	4 cut(s)	285, 587, 818, 821
BccI	CCATC	8 cut(s)	85, 278, 326, 367, 383, 564, 665, 754
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	485
BisI	GCNGC	4 cut(s)	274, 601, 807, 810
BlpI	GCTNAGC	1 cut(s)	161
BlsI	GCNGC	4 cut(s)	275, 602, 808, 811
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	3 cut(s)	351, 514, 650
BmgT120I	GGNCC	3 cut(s)	351, 514, 650
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	2 cut(s)	258, 590
BpiI	GAAGAC	1 cut(s)	759
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpmI	CTGGAG	1 cut(s)	262
Bpu1102I	GCTNAGC	1 cut(s)	161
Bpu14I	TTCGAA	1 cut(s)	739
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	764
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	305
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 154
Bse1I	ACTGG	1 cut(s)	279
Bse21I	CCTNAGG	1 cut(s)	610
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	647
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	5 cut(s)	237, 359, 394, 556, 644
BseJI	GATNNNNATC	1 cut(s)	393
BseLI	CCNNNNNNNGG	2 cut(s)	127, 154
BseMII	CTCAG	2 cut(s)	175, 258
BseNI	ACTGG	1 cut(s)	279
BseXI	GCAGC	4 cut(s)	285, 587, 818, 821
BshFI	GGCC	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	162, 464
BsiSI	CCGG	1 cut(s)	648
BslFI	GGGAC	2 cut(s)	443, 605
BslI	CCNNNNNNNGG	2 cut(s)	127, 154
BsmAI	GTCTC	1 cut(s)	308
BsmFI	GGGAC	2 cut(s)	443, 605
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	739
Bsp1286I	GDGCHC	4 cut(s)	162, 464, 593, 710
Bsp13I	TCCGGA	1 cut(s)	647
Bsp143I	GATC	1 cut(s)	614
Bsp1720I	GCTNAGC	1 cut(s)	161
BspACI	CCGC	1 cut(s)	598
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	2 cut(s)	174, 259
BspEI	TCCGGA	1 cut(s)	647
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	1 cut(s)	622
BspT104I	TTCGAA	1 cut(s)	739
BspTNI	GGTCTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	1 cut(s)	614
BssNI	GRCGYC	1 cut(s)	764
BssT1I	CCWWGG	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	88, 227
Bst6I	CTCTTC	1 cut(s)	306
BstACI	GRCGYC	1 cut(s)	764
BstBI	TTCGAA	1 cut(s)	739
BstDEI	CTNAG	3 cut(s)	161, 267, 610
BstF5I	GGATG	5 cut(s)	237, 359, 394, 556, 644
BstKTI	GATC	1 cut(s)	617
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	614
BstMWI	GCNNNNNNNGC	2 cut(s)	597, 806
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	285, 587, 818, 821
BstV2I	GAAGAC	1 cut(s)	759
Bsu36I	CCTNAGG	1 cut(s)	610
BsuRI	GGCC	1 cut(s)	326
BtsCI	GGATG	5 cut(s)	237, 359, 394, 556, 644
BtsIMutI	CAGTG	2 cut(s)	232, 286
BveI	ACCTGC	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	351, 514, 650
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	54, 133
CspCI	CAANNNNNGTGG	2 cut(s)	510, 545
CviAII	CATG	3 cut(s)	136, 294, 604
CviQI	GTAC	2 cut(s)	54, 133
DdeI	CTNAG	3 cut(s)	161, 267, 610
DpnI	GATC	1 cut(s)	616
DpnII	GATC	1 cut(s)	614
DraIII	CACNNNGTG	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	305
Eco24I	GRGCYC	3 cut(s)	162, 593, 710
Eco31I	GGTCTC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	171
Eco47I	GGWCC	3 cut(s)	351, 514, 650
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	815
Eco81I	CCTNAGG	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	305
EcoT38I	GRGCYC	3 cut(s)	162, 593, 710
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	3 cut(s)	139, 297, 607
FaiI	YATR	7 cut(s)	137, 295, 336, 345, 411, 540, 605
FaqI	GGGAC	2 cut(s)	443, 605
FatI	CATG	3 cut(s)	135, 293, 603
Fnu4HI	GCNGC	4 cut(s)	274, 601, 807, 810
FokI	GGATG	5 cut(s)	224, 346, 401, 543, 631
FriOI	GRGCYC	3 cut(s)	162, 593, 710
Fsp4HI	GCNGC	4 cut(s)	274, 601, 807, 810
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	4 cut(s)	274, 601, 807, 810
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	1 cut(s)	648
HgaI	GACGC	1 cut(s)	753
Hin1I	GRCGYC	1 cut(s)	764
Hin1II	CATG	3 cut(s)	139, 297, 607
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	648
HphI	GGTGA	4 cut(s)	61, 100, 107, 557
Hpy166II	GTNNAC	2 cut(s)	84, 548
Hpy188I	TCNGA	5 cut(s)	190, 268, 364, 501, 697
Hpy188III	TCNNGA	4 cut(s)	349, 648, 665, 819
Hpy8I	GTNNAC	2 cut(s)	84, 548
HpyAV	CCTTC	4 cut(s)	148, 487, 536, 576
HpyCH4III	ACNGT	2 cut(s)	88, 227
HpyCH4V	TGCA	4 cut(s)	43, 297, 603, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	597, 806
HpyF3I	CTNAG	3 cut(s)	161, 267, 610
Hsp92I	GRCGYC	1 cut(s)	764
Hsp92II	CATG	3 cut(s)	139, 297, 607
Kpn2I	TCCGGA	1 cut(s)	647
Kzo9I	GATC	1 cut(s)	614
LmnI	GCTCC	4 cut(s)	23, 157, 281, 475
Lsp1109I	GCAGC	4 cut(s)	285, 587, 818, 821
LweI	GCATC	2 cut(s)	258, 590
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	1 cut(s)	616
MboI	GATC	1 cut(s)	614
MboII	GAAGA	4 cut(s)	323, 759, 821, 834
MfeI	CAATTG	1 cut(s)	122
MhlI	GDGCHC	4 cut(s)	162, 464, 593, 710
MluCI	AATT	4 cut(s)	38, 122, 330, 522
MmeI	TCCRAC	2 cut(s)	108, 497
MnlI	CCTC	3 cut(s)	28, 505, 643
MroI	TCCGGA	1 cut(s)	647
MseI	TTAA	2 cut(s)	198, 243
MspA1I	CMGCKG	1 cut(s)	600
MspI	CCGG	1 cut(s)	648
MspR9I	CCNGG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	2 cut(s)	597, 806
NdeII	GATC	1 cut(s)	614
NlaIII	CATG	3 cut(s)	139, 297, 607
NspV	TTCGAA	1 cut(s)	739
PfeI	GAWTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	4 cut(s)	275, 602, 808, 811
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspPI	GGNCC	3 cut(s)	351, 514, 650
RsaI	GTAC	2 cut(s)	55, 134
RsaNI	GTAC	2 cut(s)	54, 133
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	198, 243
SatI	GCNGC	4 cut(s)	274, 601, 807, 810
Sau3AI	GATC	1 cut(s)	614
Sau96I	GGNCC	3 cut(s)	351, 514, 650
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	4 cut(s)	162, 464, 593, 710
SfaNI	GCATC	2 cut(s)	258, 590
SfuI	TTCGAA	1 cut(s)	739
SinI	GGWCC	3 cut(s)	351, 514, 650
Sse9I	AATT	4 cut(s)	38, 122, 330, 522
SsiI	CCGC	1 cut(s)	598
SspMI	CTAG	1 cut(s)	444
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	88, 227
TaqI	TCGA	1 cut(s)	739
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	4 cut(s)	38, 122, 330, 522
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	198, 243
Tru9I	TTAA	2 cut(s)	198, 243
TscAI	CASTG	2 cut(s)	232, 286
TseI	GCWGC	4 cut(s)	273, 600, 806, 809
TspDTI	ATGAA	2 cut(s)	152, 555
TspRI	CASTG	2 cut(s)	232, 286
Van91I	CCANNNNNTGG	1 cut(s)	127
VpaK11BI	GGWCC	3 cut(s)	351, 514, 650
XapI	RAATTY	1 cut(s)	330
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.