Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000341.1

Orthogroup ID

OG0006050

Physical Location & Seq

Genomic Coordinates Forward (+)

18290 .. 20024

Gene Structure 1735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000341.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggactattcatcagctgctgcgtatgatacttctctggatcttaacaccaggcctctccggcttttcgatgattctcctccgatcaagaaagaggtgcagagcaagattttgtccgactttggaagggagctctcagcaaaagaagagagtggagctttggtagaggaattgcacagggtgagcaccgaaaacaagaagctgactgaaatgttgacggtgatgggtgagagctacaatgctttgagaagccaattgttggagtacatgagcaagaacccagagaaggagctcagcccgatatccaagaaaagaaagtctgaaagtagtaacaacaacaacaacaacaacagtgctaacaacatccttaatggcatgaacaatggaaactctgagagcagctccagtgatggagaatcatgcaagaagccaagggaagagaccatcaaggccaaaatttataggtcttatgtcaggaccgaaccatccgatacaacaagcttggttgtcaaggatgggtaccaatggagaaaatatggtcaaaaagttacaagggacaatccttgtcctagagcttacttcaagtgctcttttgctccaacctgccctgtcaaaaagaaggttcagagaagtgttgaggaccaatcaattctggtggcaacttatgaaggtgaacacaaccatcccaatccttctcaacttgaagcatcatcgggctcaaaccgctgcatgaccttaggatcagtcccctgctcaacctctcttggcacatccggaccaaccatcactcttgacttgacaaaatccaagtccaatacttctgataccaagagcccgaaaccaagaactgaaacaccggaagttcgaaagcttttggtggaacagatggcgtcttccttgaccaaagaccccaacttcacaaaagcacttgcagcagccatttcaggaagatttcttcagcacgatacttactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0002237 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046677 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

324

Amino Acids

35.93

Weight (kDa)

8.84

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80840 AT2G25000 AT2G25000 AT2G25000 AT2G25000 AT3G32090 AT4G31800 AT4G31800 AT4G31800
fragaria_vesca	FvH4_6g28650 FvH4_6g28650 FvH4_6g28650
malus_domestica	MD09G1224500.v1.1 MD17G1223100.v1.1
prunus_persica	Prupe.3G098100_v2.0.a1
pyrus_communis	pycom09g14410 pycom17g22700
rosa_chinensis	RchiOBHm_Chr2g0133001
rosa_laevigata	RLG00000019302
rosa_multiflora	Rmu_sc0000341.1_g000003
rosa_roxburghii	Rroxscaffold_2G00111570
rosa_rugosa	Rorug02G0309200
rosa_samantha	Rh2AG361500 Rh2BG367200 Rh2CG344700 Rh2DG384200
rosa_wichuraiana	Rw2G029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	611
Acc65I	GGTACC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	519
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccIII	TCCGGA	1 cut(s)	773
AciI	CCGC	1 cut(s)	724
AclWI	GGATC	2 cut(s)	48, 748
AcsI	RAATTY	1 cut(s)	456
AcuI	CTGAAG	1 cut(s)	941
AcyI	GRCGYC	1 cut(s)	890
AdeI	CACNNNGTG	1 cut(s)	181
AfaI	GTAC	2 cut(s)	266, 521
AfiI	CCNNNNNNNGG	2 cut(s)	259, 286
AgsI	TTSAA	2 cut(s)	583, 704
AjnI	CCWGG	1 cut(s)	50
Alw21I	GWGCWC	4 cut(s)	135, 188, 294, 590
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	2 cut(s)	48, 748
AlwNI	CAGNNNCTG	1 cut(s)	20
Aor13HI	TCCGGA	1 cut(s)	773
AoxI	GGCC	2 cut(s)	53, 450
ApeKI	GCWGC	6 cut(s)	17, 20, 399, 726, 932, 935
ApoI	RAATTY	1 cut(s)	456
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
Asp718I	GGTACC	1 cut(s)	519
AspS9I	GGNCC	3 cut(s)	477, 640, 776
AsuHPI	GGTGA	4 cut(s)	193, 232, 239, 683
AsuII	TTCGAA	1 cut(s)	865
AvaII	GGWCC	3 cut(s)	477, 640, 776
AxyI	CCTNAGG	1 cut(s)	736
BanI	GGYRCC	1 cut(s)	519
BanII	GRGCYC	4 cut(s)	135, 294, 719, 836
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	4 cut(s)	135, 188, 294, 590
BbvI	GCAGC	6 cut(s)	4, 7, 411, 713, 944, 947
BccI	CCATC	8 cut(s)	217, 404, 452, 493, 509, 690, 791, 880
BciT130I	CCWGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	570
BfuAI	ACCTGC	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	6 cut(s)	18, 21, 400, 727, 933, 936
BlpI	GCTNAGC	1 cut(s)	293
BlsI	GCNGC	6 cut(s)	19, 22, 401, 728, 934, 937
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	3 cut(s)	477, 640, 776
BmgT120I	GGNCC	3 cut(s)	477, 640, 776
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	885
BplI	GAGNNNNNCTC	2 cut(s)	386, 418
BpmI	CTGGAG	1 cut(s)	388
Bpu1102I	GCTNAGC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	865
BsaHI	GRCGYC	1 cut(s)	890
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	2 cut(s)	773, 856
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 286
Bse1I	ACTGG	1 cut(s)	405
Bse21I	CCTNAGG	1 cut(s)	736
BseAI	TCCGGA	1 cut(s)	773
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	5 cut(s)	363, 485, 520, 682, 770
BseLI	CCNNNNNNNGG	2 cut(s)	259, 286
BseMII	CTCAG	3 cut(s)	150, 307, 384
BseNI	ACTGG	1 cut(s)	405
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	6 cut(s)	4, 7, 411, 713, 944, 947
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	55, 452
BshNI	GGYRCC	1 cut(s)	519
BsiHKAI	GWGCWC	4 cut(s)	135, 188, 294, 590
BsiSI	CCGG	3 cut(s)	61, 774, 857
BslFI	GGGAC	2 cut(s)	569, 731
BslI	CCNNNNNNNGG	2 cut(s)	259, 286
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	2 cut(s)	569, 731
BsnI	GGCC	2 cut(s)	55, 452
Bso31I	GGTCTC	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	865
Bsp1286I	GDGCHC	6 cut(s)	135, 188, 294, 590, 719, 836
Bsp13I	TCCGGA	1 cut(s)	773
Bsp143I	GATC	3 cut(s)	40, 84, 740
Bsp1720I	GCTNAGC	1 cut(s)	293
BspACI	CCGC	1 cut(s)	724
BspANI	GGCC	2 cut(s)	55, 452
BspCNI	CTCAG	3 cut(s)	149, 306, 385
BspEI	TCCGGA	1 cut(s)	773
BspLI	GGNNCC	1 cut(s)	521
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	48, 748
BspT104I	TTCGAA	1 cut(s)	865
BspT107I	GGYRCC	1 cut(s)	519
BspTNI	GGTCTC	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	405
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	40, 84, 740
BssNI	GRCGYC	1 cut(s)	890
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	220, 353
Bst6I	CTCTTC	2 cut(s)	141, 432
BstACI	GRCGYC	1 cut(s)	890
BstBI	TTCGAA	1 cut(s)	865
BstDEI	CTNAG	4 cut(s)	136, 293, 393, 736
BstF5I	GGATG	5 cut(s)	363, 485, 520, 682, 770
BstKTI	GATC	3 cut(s)	43, 87, 743
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	3 cut(s)	40, 84, 740
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 723, 932
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	6 cut(s)	4, 7, 411, 713, 944, 947
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
Bsu36I	CCTNAGG	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	55, 452
BtsCI	GGATG	5 cut(s)	363, 485, 520, 682, 770
BtsIMutI	CAGTG	2 cut(s)	358, 412
BveI	ACCTGC	1 cut(s)	611
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	3 cut(s)	477, 640, 776
CseI	GACGC	1 cut(s)	879
Csp6I	GTAC	2 cut(s)	265, 520
CspCI	CAANNNNNGTGG	2 cut(s)	636, 671
CviAII	CATG	4 cut(s)	268, 376, 420, 730
CviQI	GTAC	2 cut(s)	265, 520
DdeI	CTNAG	4 cut(s)	136, 293, 393, 736
DpnI	GATC	3 cut(s)	42, 86, 742
DpnII	GATC	3 cut(s)	40, 84, 740
DraIII	CACNNNGTG	1 cut(s)	181
Eam1104I	CTCTTC	2 cut(s)	141, 432
EarI	CTCTTC	2 cut(s)	141, 432
Ecl136II	GAGCTC	2 cut(s)	133, 292
Eco130I	CCWWGG	1 cut(s)	431
Eco147I	AGGCCT	1 cut(s)	55
Eco24I	GRGCYC	4 cut(s)	135, 294, 719, 836
Eco31I	GGTCTC	1 cut(s)	434
Eco32I	GATATC	1 cut(s)	303
Eco47I	GGWCC	3 cut(s)	477, 640, 776
Eco53kI	GAGCTC	2 cut(s)	133, 292
Eco57I	CTGAAG	1 cut(s)	941
Eco81I	CCTNAGG	1 cut(s)	736
EcoICRI	GAGCTC	2 cut(s)	133, 292
EcoRII	CCWGG	1 cut(s)	50
EcoRV	GATATC	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	4 cut(s)	135, 294, 719, 836
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	4 cut(s)	271, 379, 423, 733
FaiI	YATR	9 cut(s)	27, 269, 377, 421, 462, 471, 537, 666, 731
FaqI	GGGAC	2 cut(s)	569, 731
FatI	CATG	4 cut(s)	267, 375, 419, 729
Fnu4HI	GCNGC	6 cut(s)	18, 21, 400, 727, 933, 936
FokI	GGATG	5 cut(s)	350, 472, 527, 669, 757
FriOI	GRGCYC	4 cut(s)	135, 294, 719, 836
Fsp4HI	GCNGC	6 cut(s)	18, 21, 400, 727, 933, 936
FspBI	CTAG	1 cut(s)	570
GluI	GCNGC	6 cut(s)	18, 21, 400, 727, 933, 936
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	55, 452
HapII	CCGG	3 cut(s)	61, 774, 857
HgaI	GACGC	1 cut(s)	879
Hin1I	GRCGYC	1 cut(s)	890
Hin1II	CATG	4 cut(s)	271, 379, 423, 733
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	2 cut(s)	499, 869
HinfI	GANTC	2 cut(s)	74, 416
HpaII	CCGG	3 cut(s)	61, 774, 857
HphI	GGTGA	4 cut(s)	193, 232, 239, 683
Hpy166II	GTNNAC	2 cut(s)	216, 674
Hpy188I	TCNGA	7 cut(s)	84, 118, 322, 394, 490, 627, 823
Hpy188III	TCNNGA	6 cut(s)	38, 88, 475, 774, 791, 945
Hpy8I	GTNNAC	2 cut(s)	216, 674
HpyAV	CCTTC	5 cut(s)	120, 280, 613, 662, 702
HpyCH4III	ACNGT	2 cut(s)	220, 353
HpyCH4V	TGCA	5 cut(s)	100, 175, 423, 729, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 723, 932
HpyF3I	CTNAG	4 cut(s)	136, 293, 393, 736
Hsp92I	GRCGYC	1 cut(s)	890
Hsp92II	CATG	4 cut(s)	271, 379, 423, 733
Kpn2I	TCCGGA	1 cut(s)	773
KpnI	GGTACC	1 cut(s)	523
Kzo9I	GATC	3 cut(s)	40, 84, 740
LmnI	GCTCC	5 cut(s)	130, 155, 289, 407, 601
Lsp1109I	GCAGC	6 cut(s)	4, 7, 411, 713, 944, 947
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	329, 547
MalI	GATC	3 cut(s)	42, 86, 742
MboI	GATC	3 cut(s)	40, 84, 740
MboII	GAAGA	5 cut(s)	158, 449, 885, 947, 960
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	6 cut(s)	135, 188, 294, 590, 719, 836
MluCI	AATT	4 cut(s)	170, 254, 456, 648
MmeI	TCCRAC	3 cut(s)	141, 240, 623
MnlI	CCTC	6 cut(s)	66, 88, 90, 160, 631, 769
MroI	TCCGGA	1 cut(s)	773
MseI	TTAA	2 cut(s)	45, 369
MspA1I	CMGCKG	2 cut(s)	17, 726
MspI	CCGG	3 cut(s)	61, 774, 857
MspR9I	CCNGG	1 cut(s)	52
MunI	CAATTG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	61, 723, 932
NdeII	GATC	3 cut(s)	40, 84, 740
NlaIII	CATG	4 cut(s)	271, 379, 423, 733
NlaIV	GGNNCC	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	865
PceI	AGGCCT	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	74, 416
PflMI	CCANNNNNTGG	1 cut(s)	259
PkrI	GCNGC	6 cut(s)	19, 22, 401, 728, 934, 937
Psp124BI	GAGCTC	2 cut(s)	135, 294
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	521
PspPI	GGNCC	3 cut(s)	477, 640, 776
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	2 cut(s)	266, 521
RsaNI	GTAC	2 cut(s)	265, 520
SacI	GAGCTC	2 cut(s)	135, 294
SaqAI	TTAA	2 cut(s)	45, 369
SatI	GCNGC	6 cut(s)	18, 21, 400, 727, 933, 936
Sau3AI	GATC	3 cut(s)	40, 84, 740
Sau96I	GGNCC	3 cut(s)	477, 640, 776
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	6 cut(s)	135, 188, 294, 590, 719, 836
SfaNI	GCATC	1 cut(s)	716
SfuI	TTCGAA	1 cut(s)	865
SinI	GGWCC	3 cut(s)	477, 640, 776
Sse9I	AATT	4 cut(s)	170, 254, 456, 648
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	724
SspMI	CTAG	1 cut(s)	570
SstI	GAGCTC	2 cut(s)	135, 294
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	2 cut(s)	220, 353
TaqI	TCGA	2 cut(s)	69, 865
TaqII	GACCGA	1 cut(s)	494
TasI	AATT	4 cut(s)	170, 254, 456, 648
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	74, 416
Tru1I	TTAA	2 cut(s)	45, 369
Tru9I	TTAA	2 cut(s)	45, 369
TscAI	CASTG	2 cut(s)	358, 412
TseI	GCWGC	6 cut(s)	17, 20, 399, 726, 932, 935
TspDTI	ATGAA	2 cut(s)	392, 681
TspRI	CASTG	2 cut(s)	358, 412
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	3 cut(s)	477, 640, 776
XapI	RAATTY	1 cut(s)	456
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.