Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Forward (+)

2234019 .. 2236470

Gene Structure 2452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G05840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGCAGAGGAAGCGGCGCTGGTTACGATCGTCACATCACTATTTTCTCACCGGAAGGTCGTCTCTTCCAAGTCGAGTATGCTTTCAAAGCCGTGAAAGCAGCTGGAATCACATCGATCGGTGTCCGAGGGAAAGATTCAGTATGCGTCGTTACGCAGAAGAAAGTTCCGGACAAGCTTTTGGATCAGTCTAGTGTATCTCACCTTTTCCCTGTTACCAAGTACCTTGGATTGTTAGCCACTGGCATGACAGCTGATTCAAGGTCATTGGTACAACAAGCTAGGAATGAGGCTGCTGAGTTTAGGTTCCAATATGGTTATGAGATGCCTGCAGATATTCTTGCTAAATGGATTGCAGATAAGTCTCAGGTTTACACACAACATGCTTACATGAGACCCCTTGGAGTAGTTGCCATGGTTCTAGGTATTGATGAAGAGAGAGGACCTCTACTTTACAAGTGTGACCCAGCTGGACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAAGAACAAGAAGCAGTCAATTTCTTGGAGAAGAAAATGAAAGAAAACCCTGCCTTCACATATGATGAAACAGTACAGACTGCTATATCCGCTCTCCAATCTGTTCTTCAAGAAGACTTCAAAGCAACTGAAATTGAGGTGGGAGTTGTGAGAGCTGATGACCCTCTCTTCCGTTCCCTGAGAACAGAGGAGATCGACGAGCACTTGACGGCCATTAGTGAACGTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0005840 GO:0005844 GO:0008150 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0019773 GO:0022626 GO:0031090 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

246

Amino Acids

27.35

Weight (kDa)

5.75

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	9 - 31	3.8e-15	Proteasome subunit A N-terminal signature
Proteasome	PF00227	36 - 220	4.9e-50	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	602
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	2 cut(s)	15, 600
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	720
AfaI	GTAC	3 cut(s)	224, 273, 585
AgsI	TTSAA	4 cut(s)	88, 261, 620, 631
AhlI	ACTAGT	1 cut(s)	497
AjuI	GAANNNNNNNTTGG	2 cut(s)	600, 632
AluBI	AGCT	6 cut(s)	104, 178, 254, 281, 470, 665
AluI	AGCT	6 cut(s)	104, 178, 254, 281, 470, 665
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	3 cut(s)	68, 369, 388
AlwI	GGATC	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	1 cut(s)	720
ApeKI	GCWGC	2 cut(s)	101, 293
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	443
AsuHPI	GGTGA	2 cut(s)	42, 194
AvaII	GGWCC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	630
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	113, 280
BceAI	ACGGC	2 cut(s)	77, 735
BcoDI	GTCTC	3 cut(s)	68, 369, 388
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	4 cut(s)	192, 282, 422, 498
BfmI	CTRYAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	3 cut(s)	16, 102, 294
BlsI	GCNGC	3 cut(s)	17, 103, 295
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	308
BmsI	GCATC	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	630
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
Bsa29I	ATCGAT	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	4 cut(s)	127, 226, 400, 414
BsaWI	WCCGGW	2 cut(s)	52, 169
Bse1I	ACTGG	1 cut(s)	247
BseAI	TCCGGA	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	116
BseDI	CCNNGG	4 cut(s)	127, 226, 400, 414
BseMII	CTCAG	3 cut(s)	288, 380, 680
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	2 cut(s)	113, 280
BseYI	CCCAGC	1 cut(s)	466
Bsh1285I	CGRYCG	2 cut(s)	31, 120
BshFI	GGCC	1 cut(s)	722
BshVI	ATCGAT	1 cut(s)	116
BsiEI	CGRYCG	2 cut(s)	31, 120
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	53, 170
BsmAI	GTCTC	3 cut(s)	68, 369, 388
BsmBI	CGTCTC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	722
Bso31I	GGTCTC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	4 cut(s)	28, 117, 184, 702
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	2 cut(s)	15, 600
BspANI	GGCC	1 cut(s)	722
BspCNI	CTCAG	3 cut(s)	289, 379, 681
BspDI	ATCGAT	1 cut(s)	116
BspEI	TCCGGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	308
BspMAI	CTGCAG	1 cut(s)	334
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	388
BsrBI	CCGCTC	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	4 cut(s)	127, 226, 400, 414
BssMI	GATC	4 cut(s)	28, 117, 184, 702
BssT1I	CCWWGG	3 cut(s)	226, 400, 414
Bst4CI	ACNGT	2 cut(s)	485, 583
Bst6I	CTCTTC	3 cut(s)	71, 429, 683
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	3 cut(s)	297, 366, 689
BstDSI	CCRYGG	1 cut(s)	414
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	4 cut(s)	31, 120, 187, 705
BstMAI	GTCTC	3 cut(s)	68, 369, 388
BstMBI	GATC	4 cut(s)	28, 117, 184, 702
BstMCI	CGRYCG	2 cut(s)	31, 120
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 89, 98, 500, 599
BstNSI	RCATGY	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	113, 280
BstV2I	GAAGAC	1 cut(s)	630
Bsu15I	ATCGAT	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	722
BsuTUI	ATCGAT	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	330
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	443
ClaI	ATCGAT	1 cut(s)	116
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	223, 272, 584
CviAII	CATG	4 cut(s)	247, 383, 391, 415
CviQI	GTAC	3 cut(s)	223, 272, 584
DdeI	CTNAG	3 cut(s)	297, 366, 689
DpnI	GATC	4 cut(s)	30, 119, 186, 704
DpnII	GATC	4 cut(s)	28, 117, 184, 702
EaeI	YGGCCR	1 cut(s)	720
Eam1104I	CTCTTC	3 cut(s)	71, 429, 683
EarI	CTCTTC	3 cut(s)	71, 429, 683
Eco130I	CCWWGG	3 cut(s)	226, 400, 414
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	443
EcoT14I	CCWWGG	3 cut(s)	226, 400, 414
ErhI	CCWWGG	3 cut(s)	226, 400, 414
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	4 cut(s)	250, 386, 394, 418
FatI	CATG	4 cut(s)	246, 382, 390, 414
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	16, 102, 294
Fsp4HI	GCNGC	3 cut(s)	16, 102, 294
FspBI	CTAG	4 cut(s)	192, 282, 422, 498
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	3 cut(s)	16, 102, 294
GsaI	CCCAGC	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	722
HapII	CCGG	2 cut(s)	53, 170
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	250, 386, 394, 418
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	3 cut(s)	108, 137, 257
HpaII	CCGG	2 cut(s)	53, 170
HphI	GGTGA	2 cut(s)	42, 194
Hpy166II	GTNNAC	2 cut(s)	373, 731
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	2 cut(s)	170, 620
Hpy8I	GTNNAC	2 cut(s)	373, 731
Hpy99I	CGWCG	2 cut(s)	152, 710
HpyAV	CCTTC	2 cut(s)	50, 574
HpyCH4III	ACNGT	2 cut(s)	485, 583
HpyCH4IV	ACGT	1 cut(s)	733
HpyCH4V	TGCA	2 cut(s)	332, 356
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 89, 98, 500, 599
HpyF3I	CTNAG	3 cut(s)	297, 366, 689
HpySE526I	ACGT	1 cut(s)	733
Hsp92II	CATG	4 cut(s)	250, 386, 394, 418
HspAI	GCGC	1 cut(s)	18
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	28, 117, 184, 702
Lsp1109I	GCAGC	2 cut(s)	113, 280
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	4 cut(s)	192, 282, 422, 498
MaeII	ACGT	1 cut(s)	733
MaeIII	GTNAC	7 cut(s)	23, 32, 151, 214, 461, 485, 734
MalI	GATC	4 cut(s)	30, 119, 186, 704
MbiI	CCGCTC	1 cut(s)	602
MboI	GATC	4 cut(s)	28, 117, 184, 702
MboII	GAAGA	7 cut(s)	58, 172, 446, 553, 608, 635, 670
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	2 cut(s)	529, 642
MnlI	CCTC	7 cut(s)	122, 283, 434, 456, 640, 684, 691
MroI	TCCGGA	1 cut(s)	169
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	3 cut(s)	104, 254, 470
MspI	CCGG	2 cut(s)	53, 170
MwoI	GCNNNNNNNGC	5 cut(s)	12, 89, 98, 500, 599
NcoI	CCATGG	1 cut(s)	414
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	4 cut(s)	28, 117, 184, 702
NlaIII	CATG	4 cut(s)	250, 386, 394, 418
NlaIV	GGNNCC	1 cut(s)	308
NmuCI	GTSAC	4 cut(s)	32, 461, 485, 734
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	3 cut(s)	108, 137, 257
PkrI	GCNGC	3 cut(s)	17, 103, 295
Ple19I	CGATCG	2 cut(s)	31, 120
PpuMI	RGGWCCY	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	308
PspPI	GGNCC	1 cut(s)	443
PspPPI	RGGWCCY	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	334
PvuI	CGATCG	2 cut(s)	31, 120
PvuII	CAGCTG	3 cut(s)	104, 254, 470
RsaI	GTAC	3 cut(s)	224, 273, 585
RsaNI	GTAC	3 cut(s)	223, 272, 584
RseI	CAYNNNNRTG	1 cut(s)	245
SatI	GCNGC	3 cut(s)	16, 102, 294
Sau3AI	GATC	4 cut(s)	28, 117, 184, 702
Sau96I	GGNCC	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	1 cut(s)	245
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	2 cut(s)	529, 642
SsiI	CCGC	2 cut(s)	15, 600
SspMI	CTAG	4 cut(s)	192, 282, 422, 498
StyI	CCWWGG	3 cut(s)	226, 400, 414
TaaI	ACNGT	2 cut(s)	485, 583
TaiI	ACGT	1 cut(s)	736
TaqI	TCGA	3 cut(s)	75, 116, 705
TasI	AATT	2 cut(s)	529, 642
TatI	WGTACW	1 cut(s)	583
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	3 cut(s)	108, 137, 257
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	4 cut(s)	32, 461, 485, 734
TseI	GCWGC	2 cut(s)	101, 293
Tsp45I	GTSAC	4 cut(s)	32, 461, 485, 734
TspDTI	ATGAA	4 cut(s)	447, 524, 563, 591
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	443
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	4 cut(s)	192, 282, 422, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.