Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Reverse (-)

27695458 .. 27699408

Gene Structure 3951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTCGCGGTAGTGGTGGAGGATACGACCGTCATATCACGATCTTCTCACCCGAGGGTCGTCTCTTCCAAGTCGAATATGCGTTTAAGGCTGTGAAGTCTGCCGGGATTACCTCCATCGGTGTCCGAGGGAAGGATTCAGTATGTGTTGTGACTCAGAAGAAAGTCCCGGACAAGCTTTTGGATCAGTCTAGTGTCACTCATCTCTTCCCCATTACGAAGTTCCTAGGGTTGCTGGCTACTGGCATGACAGCGGATGCAAGGACCCTAGTATCACAAGCAAGGAATGAAGCTGCTGACTTCCGATTCAAAAATGGATATGAGATGCCTGTAGATGTATTGGCTAACTGGATTGCAAACAAATCACAAGTCTATACACAACATGCTTATATGAGACCACTGGGAGTAGTTGCTATGGTGTTGGGTGTTGATGAAGAGACCGGACCTCAACTCTATAAGTGTGACCCAGCTGGTCATTACTTTGGTCATAAGGCCACAAGTGCTGGATTGAAAGAACAAGAGGCAATTAATTTCTTAGAGAAGAAAATGAAGAATGACCCTTCCTTTACTTATGACGAGACTGTGCAGACTGCCATTTCTGCACTGCAATCAGTTCTGCAAGAGGATTTCAAGGCCACAGAAATTGAGGTTGGAGTGGTGAGTATGGAGAATCCCGCTTTTAGAGTGTTGTCCACTGAAGAGATTGATGAGCACTTGACAGCCATAAGTGAGCGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

247

Amino Acids

27.11

Weight (kDa)

5.58

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	9 - 31	3.8e-15	Proteasome subunit A N-terminal signature
Proteasome	PF00227	35 - 220	6.2e-52	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	3 cut(s)	9, 254, 675
AclWI	GGATC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	717
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	310, 511, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	3 cut(s)	178, 293, 470
AluI	AGCT	3 cut(s)	178, 293, 470
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	4 cut(s)	68, 388, 431, 572
AlwI	GGATC	1 cut(s)	192
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	2 cut(s)	492, 633
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AseI	ATTAAT	1 cut(s)	528
AspA2I	CCTAGG	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	264, 443
AsuC2I	CCSGG	2 cut(s)	106, 170
AsuHPI	GGTGA	2 cut(s)	42, 670
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	2 cut(s)	264, 443
AvrII	CCTAGG	1 cut(s)	226
BaeI	ACNNNNGTAYC	4 cut(s)	16, 49, 255, 288
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	17
BcnI	CCSGG	2 cut(s)	106, 170
BcoDI	GTCTC	4 cut(s)	68, 388, 431, 572
BfaI	CTAG	3 cut(s)	192, 227, 269
BfmI	CTRYAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	294
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	2 cut(s)	106, 170
Bme18I	GGWCC	2 cut(s)	264, 443
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	2 cut(s)	264, 443
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	106, 170
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	247, 315
BmuI	ACTGGG	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	106, 170
BsaI	GGTCTC	2 cut(s)	388, 431
BsaJI	CCNNGG	3 cut(s)	54, 127, 226
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	247, 353, 405
BseDI	CCNNGG	3 cut(s)	54, 127, 226
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	247, 353, 405
BseXI	GCAGC	1 cut(s)	280
BseYI	CCCAGC	1 cut(s)	466
BsgI	GTGCAG	2 cut(s)	585, 605
Bsh1236I	CGCG	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	494, 635
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	105, 170, 441
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	4 cut(s)	68, 388, 431, 572
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	494, 635
Bso31I	GGTCTC	2 cut(s)	388, 431
BsoBI	CYCGRG	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	2 cut(s)	42, 184
BspACI	CCGC	3 cut(s)	9, 254, 675
BspANI	GGCC	2 cut(s)	494, 635
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	2 cut(s)	388, 431
BsrI	ACTGG	3 cut(s)	247, 353, 405
BssECI	CCNNGG	3 cut(s)	54, 127, 226
BssMI	GATC	2 cut(s)	42, 184
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	32, 583
Bst6I	CTCTTC	4 cut(s)	71, 212, 429, 693
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	156, 535
BstF5I	GGATG	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	9
BstKTI	GATC	2 cut(s)	45, 187
BstMAI	GTCTC	4 cut(s)	68, 388, 431, 572
BstMBI	GATC	2 cut(s)	42, 184
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	104, 168
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	280
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	2 cut(s)	494, 635
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	602
BtsIMutI	CAGTG	3 cut(s)	398, 602, 693
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	264, 443
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	2 cut(s)	247, 383
CviJI	RGCY	9 cut(s)	92, 178, 239, 293, 344, 470, 494, 635, 722
CviKI_1	RGCY	9 cut(s)	92, 178, 239, 293, 344, 470, 494, 635, 722
DdeI	CTNAG	2 cut(s)	156, 535
DpnI	GATC	2 cut(s)	44, 186
DpnII	GATC	2 cut(s)	42, 184
Eam1104I	CTCTTC	4 cut(s)	71, 212, 429, 693
EarI	CTCTTC	4 cut(s)	71, 212, 429, 693
Eco130I	CCWWGG	1 cut(s)	226
Eco31I	GGTCTC	2 cut(s)	388, 431
Eco47I	GGWCC	2 cut(s)	264, 443
Eco57I	CTGAAG	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	250, 386
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	246, 382
FauI	CCCGC	1 cut(s)	682
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	3 cut(s)	192, 227, 269
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	494, 635
HapII	CCGG	3 cut(s)	105, 170, 441
Hin1II	CATG	2 cut(s)	250, 386
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	5 cut(s)	4, 137, 154, 306, 670
HpaII	CCGG	3 cut(s)	105, 170, 441
HphI	GGTGA	2 cut(s)	42, 670
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	3 cut(s)	128, 159, 305
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	693
HpyAV	CCTTC	2 cut(s)	127, 570
HpyCH4III	ACNGT	2 cut(s)	32, 583
HpyCH4V	TGCA	6 cut(s)	260, 356, 586, 602, 607, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
HpyF3I	CTNAG	2 cut(s)	156, 535
Hsp92II	CATG	2 cut(s)	250, 386
Kzo9I	GATC	2 cut(s)	42, 184
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	247, 315
MaeI	CTAG	3 cut(s)	192, 227, 269
MaeIII	GTNAC	3 cut(s)	151, 196, 461
MalI	GATC	2 cut(s)	44, 186
MboI	GATC	2 cut(s)	42, 184
MboII	GAAGA	8 cut(s)	37, 58, 172, 199, 446, 553, 562, 710
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	3 cut(s)	525, 529, 642
MlyI	GAGTC	2 cut(s)	13, 148
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	8 cut(s)	14, 49, 122, 124, 456, 514, 616, 640
MseI	TTAA	2 cut(s)	87, 528
MspA1I	CMGCKG	2 cut(s)	254, 470
MspI	CCGG	3 cut(s)	105, 170, 441
MspR9I	CCNGG	2 cut(s)	106, 170
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
NciI	CCSGG	2 cut(s)	106, 170
NdeII	GATC	2 cut(s)	42, 184
NlaIII	CATG	2 cut(s)	250, 386
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	3 cut(s)	151, 196, 461
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	3 cut(s)	137, 306, 670
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	2 cut(s)	12, 148
PpsI	GAGTC	2 cut(s)	12, 148
PpuMI	RGGWCCY	1 cut(s)	264
PshBI	ATTAAT	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	264, 443
PspPPI	RGGWCCY	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	87, 528
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	42, 184
Sau96I	GGNCC	2 cut(s)	264, 443
SchI	GAGTC	2 cut(s)	13, 148
ScrFI	CCNGG	2 cut(s)	106, 170
SduI	GDGCHC	1 cut(s)	714
SetI	ASST	6 cut(s)	116, 180, 295, 448, 472, 651
SfaNI	GCATC	2 cut(s)	247, 315
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	264, 443
Sse9I	AATT	3 cut(s)	525, 529, 642
SsiI	CCGC	3 cut(s)	9, 254, 675
SspMI	CTAG	3 cut(s)	192, 227, 269
StyD4I	CCNGG	2 cut(s)	104, 168
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	32, 583
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	525, 529, 642
TfiI	GAWTC	3 cut(s)	137, 306, 670
Tru1I	TTAA	2 cut(s)	87, 528
Tru9I	TTAA	2 cut(s)	87, 528
TscAI	CASTG	3 cut(s)	405, 609, 700
TseFI	GTSAC	3 cut(s)	151, 196, 461
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	3 cut(s)	151, 196, 461
TspDTI	ATGAA	3 cut(s)	303, 447, 563
TspRI	CASTG	3 cut(s)	405, 609, 700
VpaK11BI	GGWCC	2 cut(s)	264, 443
VspI	ATTAAT	1 cut(s)	528
XceI	RCATGY	1 cut(s)	386
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	3 cut(s)	192, 227, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.