Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Reverse (-)

59283066 .. 59287281

Gene Structure 4216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG436400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGTCGTGGTAGTGGTGGAGGGTACGACCGTCATATCACGATCTTCTCACCCGAAGGTCGTCTTTTCCAAGTCGAATATGCGTTTAAGGCTGTGAAGTCTGCTGGGATTACCTCCATTGGTGTCCGAGGGAAGGATTCAGTATGTGTTGTGACTCAGAAGAAAGTCCCGGACAAACTTTTGGATCAGACGAGTGTAACCCATCTTTTTCCCATTACTAAGTTCCTAGGGTTGCTGGCTACTGGCATGACAGCTGATGCAAGGACTCTGGTATCACAAGCAAGGAATGAAGCAGCTGACTTCCGATTCAAAAATGGATATGAGATGCCTGTAGATGTATTGGCTAACTGGATTGCAAACAAATCACAAGTCTATACTCAACATGCTTATATGAGACCACTGGGAGTAGTTGCTATGGTGTTGGGTGTTGATGAAGAGACCGGACCTCAACTCTATAAGTGTGACCCAGCTGGTCATTACTTTGGTCATAAGGCCACAAGTGCTGGATTGAAAGAACAGGAGGCAATTAATTTCTTAGAGAAGAAAATGAAGAATGACCCTTCCTTTACATACGAGGAGACTGTGCAGGTAGAAGTTACTTATCCTTTTATCTATTTACTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

208

Amino Acids

23.12

Weight (kDa)

7.75

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	9 - 31	3.1e-15	Proteasome subunit A N-terminal signature
Proteasome	PF00227	35 - 196	4.6e-46	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	577
AclWI	GGATC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	310, 511
AluBI	AGCT	3 cut(s)	254, 296, 470
AluI	AGCT	3 cut(s)	254, 296, 470
Alw26I	GTCTC	3 cut(s)	388, 431, 572
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	1 cut(s)	293
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AseI	ATTAAT	1 cut(s)	528
AspA2I	CCTAGG	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	226
BaeI	ACNNNNGTAYC	4 cut(s)	16, 49, 255, 288
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	388, 431, 572
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	1 cut(s)	294
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	247, 315
BmuI	ACTGGG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	170
BsaI	GGTCTC	2 cut(s)	388, 431
BsaJI	CCNNGG	2 cut(s)	127, 226
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	247, 353, 405
BseDI	CCNNGG	2 cut(s)	127, 226
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	247, 353, 405
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	1 cut(s)	305
BseYI	CCCAGC	2 cut(s)	104, 466
BsgI	GTGCAG	1 cut(s)	605
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	1 cut(s)	494
BsiEI	CGRYCG	1 cut(s)	31
BsiSI	CCGG	2 cut(s)	170, 441
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	388, 431, 572
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	494
Bso31I	GGTCTC	2 cut(s)	388, 431
Bsp143I	GATC	2 cut(s)	42, 184
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	2 cut(s)	388, 431
BsrI	ACTGG	3 cut(s)	247, 353, 405
BssECI	CCNNGG	2 cut(s)	127, 226
BssMI	GATC	2 cut(s)	42, 184
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	32, 583, 621
Bst6I	CTCTTC	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	156, 219, 535
BstKTI	GATC	2 cut(s)	45, 187
BstMAI	GTCTC	3 cut(s)	388, 431, 572
BstMBI	GATC	2 cut(s)	42, 184
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 500
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	494
BtsIMutI	CAGTG	1 cut(s)	398
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	247, 383
CviJI	RGCY	7 cut(s)	92, 239, 254, 296, 344, 470, 494
CviKI_1	RGCY	7 cut(s)	92, 239, 254, 296, 344, 470, 494
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	156, 219, 535
DpnI	GATC	2 cut(s)	44, 186
DpnII	GATC	2 cut(s)	42, 184
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	226
Eco31I	GGTCTC	2 cut(s)	388, 431
Eco47I	GGWCC	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	250, 386
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	246, 382
Fnu4HI	GCNGC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	1 cut(s)	294
GsaI	CCCAGC	2 cut(s)	108, 470
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	2 cut(s)	170, 441
Hin1II	CATG	2 cut(s)	250, 386
HinfI	GANTC	5 cut(s)	4, 137, 154, 265, 306
HpaII	CCGG	2 cut(s)	170, 441
HphI	GGTGA	1 cut(s)	42
Hpy188I	TCNGA	4 cut(s)	128, 159, 189, 305
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	50, 127, 570
HpyCH4III	ACNGT	3 cut(s)	32, 583, 621
HpyCH4V	TGCA	3 cut(s)	260, 356, 586
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 500
HpyF3I	CTNAG	3 cut(s)	156, 219, 535
Hsp92II	CATG	2 cut(s)	250, 386
Kzo9I	GATC	2 cut(s)	42, 184
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	2 cut(s)	247, 315
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	4 cut(s)	151, 196, 461, 595
MalI	GATC	2 cut(s)	44, 186
MboI	GATC	2 cut(s)	42, 184
MboII	GAAGA	5 cut(s)	37, 172, 446, 553, 562
MluCI	AATT	2 cut(s)	525, 529
MlyI	GAGTC	3 cut(s)	13, 148, 259
MnlI	CCTC	6 cut(s)	14, 122, 124, 456, 514, 568
MseI	TTAA	2 cut(s)	87, 528
MspA1I	CMGCKG	3 cut(s)	254, 296, 470
MspI	CCGG	2 cut(s)	170, 441
MspR9I	CCNGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	89, 500
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	42, 184
NlaIII	CATG	2 cut(s)	250, 386
NmuCI	GTSAC	2 cut(s)	151, 461
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	137, 306
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	3 cut(s)	12, 148, 259
PpsI	GAGTC	3 cut(s)	12, 148, 259
PshBI	ATTAAT	1 cut(s)	528
PspFI	CCCAGC	2 cut(s)	104, 466
PspPI	GGNCC	1 cut(s)	443
PvuII	CAGCTG	3 cut(s)	254, 296, 470
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	87, 528
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	42, 184
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	3 cut(s)	13, 148, 259
ScrFI	CCNGG	1 cut(s)	170
SetI	ASST	7 cut(s)	61, 116, 256, 298, 448, 472, 591
SfaNI	GCATC	2 cut(s)	247, 315
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	443
Sse9I	AATT	2 cut(s)	525, 529
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	3 cut(s)	32, 583, 621
TaqI	TCGA	1 cut(s)	75
TasI	AATT	2 cut(s)	525, 529
TfiI	GAWTC	2 cut(s)	137, 306
Tru1I	TTAA	2 cut(s)	87, 528
Tru9I	TTAA	2 cut(s)	87, 528
TscAI	CASTG	1 cut(s)	405
TseFI	GTSAC	2 cut(s)	151, 461
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	2 cut(s)	151, 461
TspDTI	ATGAA	3 cut(s)	303, 447, 563
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	528
XceI	RCATGY	1 cut(s)	386
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.