Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Forward (+)

13994187 .. 13998255

Gene Structure 4069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g15820.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGTCATTTGGGCTTTTGTTTCAAATATTCTCTTAAGCTTGCTGGTCCAAAGTTTTGGCCCGTCTCCATATTTTGGGCTCCCCCAAACAAAATGCAATACATGTGACATTGTTTCAACCTTGAACGTATTCACCAAAAATCGAAGCAATCAAATCATGAGTCGAGGAAGCGGAGGCGGATACGATCGTCACATCACGATTTTCTCACCTGAAGGTCGTCTCTTCCAAGTCGAGTATGCTTTTAAGGCCGTTAAAGCTGCTGGGATCACCTCCATTGGTGTCCGGGGAAAGGATTCAGTATGTGTTGTGACCCAGAAGAAAGTCCCGGACAAGCTTTTGGATCAGACAAGTGTCACACATCTTTTCCCCATCACTAAGTTCCTAGGGTTGCTGGCTACTGGAATGACAGCTGACGCGAGGACCCTAGTTTCGCAAGCAAGGAATGAAGCAGCTGAGTTTCGTTTCAAATATGGATACGAGATGCCTGTGGATGTGTTGGCTAAATGGATTGCAGACAAATCACAAATCTATACTCAACATGCTTACATGAGGCCACTTGGAGTAGTGGCTATGGTTTTGGGCATTGATGAAGAGCTCGGACCTCAACTCTACAAGTGTGACCCAGCTGGCCATTACTTTGGTCACAAGGCTACAAGTGCTGGATTGAAAGAGCAAGAGGCCATCAATTTCTTGGAGAAGAAAATGAAGAATGAGCCTTCATTCTCTTACGACGAGACTGTGCAGACTTGTATTTCTGCCCTGCAATCAGTTCTGCAAGAGGATTTCAAGGCCACTGAAATTGAGGTTGGAGTGGTGGTAAAGGAGAACCCTGTCTTCAGAGTGTTGTCTACCGAAGAGATTGATGAGCACTTGACTGCTATAAGTGAGCGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

299

Amino Acids

33.08

Weight (kDa)

6.11

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	848
AccII	CGCG	1 cut(s)	416
AciI	CCGC	2 cut(s)	171, 177
AclWI	GGATC	2 cut(s)	272, 348
AcoI	YGGCCR	1 cut(s)	628
AcuI	CTGAAG	2 cut(s)	231, 820
AfiI	CCNNNNNNNGG	2 cut(s)	74, 289
AflII	CTTAAG	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	6 cut(s)	24, 117, 124, 466, 667, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	789, 821
AluBI	AGCT	7 cut(s)	39, 257, 334, 410, 452, 595, 626
AluI	AGCT	7 cut(s)	39, 257, 334, 410, 452, 595, 626
Alw21I	GWGCWC	2 cut(s)	597, 870
Alw26I	GTCTC	4 cut(s)	69, 224, 728, 885
AlwI	GGATC	2 cut(s)	272, 348
AoxI	GGCC	6 cut(s)	58, 246, 551, 628, 678, 789
ApeKI	GCWGC	2 cut(s)	257, 449
ArsI	GACNNNNNNTTYG	4 cut(s)	145, 177, 412, 444
Asp700I	GAANNNNTTC	2 cut(s)	128, 292
AspA2I	CCTAGG	1 cut(s)	382
AspS9I	GGNCC	4 cut(s)	46, 59, 420, 599
AsuC2I	CCSGG	2 cut(s)	284, 326
AsuHPI	GGTGA	3 cut(s)	124, 198, 259
AvaII	GGWCC	3 cut(s)	46, 420, 599
AvrII	CCTAGG	1 cut(s)	382
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BalI	TGGCCA	1 cut(s)	630
BanII	GRGCYC	2 cut(s)	81, 597
BbsI	GAAGAC	1 cut(s)	826
Bbv12I	GWGCWC	2 cut(s)	597, 870
BbvI	GCAGC	2 cut(s)	244, 461
BccI	CCATC	2 cut(s)	377, 689
BceAI	ACGGC	1 cut(s)	233
BciVI	GTATCC	2 cut(s)	173, 467
BcnI	CCSGG	2 cut(s)	284, 326
BcoDI	GTCTC	4 cut(s)	69, 224, 728, 885
BfaI	CTAG	2 cut(s)	383, 425
BfrI	CTTAAG	1 cut(s)	34
BfuI	GTATCC	2 cut(s)	173, 467
BisI	GCNGC	2 cut(s)	258, 450
BlnI	CCTAGG	1 cut(s)	382
BlsI	GCNGC	2 cut(s)	259, 451
Bme1390I	CCNGG	2 cut(s)	284, 326
Bme18I	GGWCC	3 cut(s)	46, 420, 599
BmgT120I	GGNCC	4 cut(s)	46, 59, 420, 599
BmiI	GGNNCC	2 cut(s)	80, 422
BmrFI	CCNGG	2 cut(s)	284, 326
BmsI	GCATC	1 cut(s)	471
BoxI	GACNNNNGTC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	826
BpuMI	CCSGG	2 cut(s)	284, 326
BsaJI	CCNNGG	2 cut(s)	283, 382
BsaXI	ACNNNNNCTCC	2 cut(s)	801, 831
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 289
Bse1I	ACTGG	1 cut(s)	403
BseDI	CCNNGG	2 cut(s)	283, 382
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	2 cut(s)	74, 289
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	244, 461
BseYI	CCCAGC	2 cut(s)	260, 622
BsgI	GTGCAG	1 cut(s)	761
Bsh1236I	CGCG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	6 cut(s)	60, 248, 553, 630, 680, 791
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	597, 870
BsiSI	CCGG	2 cut(s)	283, 326
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	74, 289
BsmAI	GTCTC	4 cut(s)	69, 224, 728, 885
BsmBI	CGTCTC	2 cut(s)	69, 224
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	6 cut(s)	60, 248, 553, 630, 680, 791
Bsp1286I	GDGCHC	3 cut(s)	81, 597, 870
Bsp143I	GATC	3 cut(s)	184, 264, 340
BspACI	CCGC	2 cut(s)	171, 177
BspANI	GGCC	6 cut(s)	60, 248, 553, 630, 680, 791
BspCNI	CTCAG	1 cut(s)	445
BspFNI	CGCG	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	80, 422
BspPI	GGATC	2 cut(s)	272, 348
BspQI	GCTCTTC	1 cut(s)	585
BspTI	CTTAAG	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	283, 382
BssMI	GATC	3 cut(s)	184, 264, 340
BssT1I	CCWWGG	1 cut(s)	382
Bst4CI	ACNGT	1 cut(s)	739
Bst6I	CTCTTC	3 cut(s)	227, 585, 849
BstAFI	CTTAAG	1 cut(s)	34
BstC8I	GCNNGC	4 cut(s)	41, 393, 435, 628
BstDEI	CTNAG	2 cut(s)	375, 453
BstF5I	GGATG	1 cut(s)	496
BstFNI	CGCG	1 cut(s)	416
BstKTI	GATC	3 cut(s)	187, 267, 343
BstMAI	GTCTC	4 cut(s)	69, 224, 728, 885
BstMBI	GATC	3 cut(s)	184, 264, 340
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 254, 656
BstNSI	RCATGY	2 cut(s)	105, 542
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	282, 324
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	2 cut(s)	244, 461
BstV2I	GAAGAC	1 cut(s)	826
BstXI	CCANNNNNNTGG	2 cut(s)	56, 638
BsuI	GTATCC	2 cut(s)	173, 467
BsuRI	GGCC	6 cut(s)	60, 248, 553, 630, 680, 791
BtsCI	GGATG	1 cut(s)	496
BtsIMutI	CAGTG	1 cut(s)	792
Cac8I	GCNNGC	4 cut(s)	41, 393, 435, 628
CciI	TCATGA	1 cut(s)	156
Cfr13I	GGNCC	4 cut(s)	46, 59, 420, 599
CseI	GACGC	1 cut(s)	422
CspCI	CAANNNNNGTGG	2 cut(s)	781, 816
CviAII	CATG	4 cut(s)	102, 157, 539, 547
DdeI	CTNAG	2 cut(s)	375, 453
DpnI	GATC	3 cut(s)	186, 266, 342
DpnII	GATC	3 cut(s)	184, 264, 340
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	3 cut(s)	227, 585, 849
EarI	CTCTTC	3 cut(s)	227, 585, 849
EciI	GGCGGA	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	595
Eco130I	CCWWGG	1 cut(s)	382
Eco24I	GRGCYC	2 cut(s)	81, 597
Eco47I	GGWCC	3 cut(s)	46, 420, 599
Eco53kI	GAGCTC	1 cut(s)	595
Eco57I	CTGAAG	2 cut(s)	231, 820
EcoICRI	GAGCTC	1 cut(s)	595
EcoO109I	RGGNCCY	1 cut(s)	420
EcoT14I	CCWWGG	1 cut(s)	382
EcoT38I	GRGCYC	2 cut(s)	81, 597
ErhI	CCWWGG	1 cut(s)	382
Esp3I	CGTCTC	2 cut(s)	69, 224
FaeI	CATG	4 cut(s)	105, 160, 542, 550
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	4 cut(s)	101, 156, 538, 546
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	2 cut(s)	258, 450
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	2 cut(s)	81, 597
Fsp4HI	GCNGC	2 cut(s)	258, 450
FspBI	CTAG	2 cut(s)	383, 425
GluI	GCNGC	2 cut(s)	258, 450
GsaI	CCCAGC	2 cut(s)	264, 626
HaeIII	GGCC	6 cut(s)	60, 248, 553, 630, 680, 791
HapII	CCGG	2 cut(s)	283, 326
HgaI	GACGC	1 cut(s)	422
Hin1II	CATG	4 cut(s)	105, 160, 542, 550
HindIII	AAGCTT	2 cut(s)	37, 332
HinfI	GANTC	2 cut(s)	160, 293
HpaII	CCGG	2 cut(s)	283, 326
HphI	GGTGA	3 cut(s)	124, 198, 259
Hpy166II	GTNNAC	1 cut(s)	849
Hpy188I	TCNGA	3 cut(s)	345, 599, 839
Hpy188III	TCNNGA	2 cut(s)	157, 196
Hpy8I	GTNNAC	1 cut(s)	849
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	2 cut(s)	206, 726
HpyCH4III	ACNGT	1 cut(s)	739
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	5 cut(s)	96, 512, 742, 763, 775
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 254, 656
HpyF3I	CTNAG	2 cut(s)	375, 453
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	105, 160, 542, 550
Kzo9I	GATC	3 cut(s)	184, 264, 340
LguI	GCTCTTC	1 cut(s)	585
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	2 cut(s)	244, 461
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	2 cut(s)	383, 425
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	6 cut(s)	104, 188, 307, 352, 617, 641
MalI	GATC	3 cut(s)	186, 266, 342
MboI	GATC	3 cut(s)	184, 264, 340
MboII	GAAGA	7 cut(s)	214, 328, 602, 709, 718, 826, 866
MhlI	GDGCHC	3 cut(s)	81, 597, 870
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	2 cut(s)	685, 798
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	787
MnlI	CCTC	9 cut(s)	158, 167, 280, 411, 543, 612, 670, 772, 796
Mox20I	TGGCCA	1 cut(s)	630
MroXI	GAANNNNTTC	2 cut(s)	128, 292
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	3 cut(s)	35, 243, 252
Msp20I	TGGCCA	1 cut(s)	630
MspA1I	CMGCKG	3 cut(s)	410, 452, 626
MspCI	CTTAAG	1 cut(s)	34
MspI	CCGG	2 cut(s)	283, 326
MspR9I	CCNGG	2 cut(s)	284, 326
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	3 cut(s)	245, 254, 656
NciI	CCSGG	2 cut(s)	284, 326
NdeII	GATC	3 cut(s)	184, 264, 340
NlaIII	CATG	4 cut(s)	105, 160, 542, 550
NlaIV	GGNNCC	2 cut(s)	80, 422
NmuCI	GTSAC	6 cut(s)	104, 188, 307, 352, 617, 641
NspI	RCATGY	2 cut(s)	105, 542
PagI	TCATGA	1 cut(s)	156
PciI	ACATGT	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	585
PdmI	GAANNNNTTC	2 cut(s)	128, 292
PfeI	GAWTC	1 cut(s)	293
PflMI	CCANNNNNTGG	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	259, 451
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	168
PpuMI	RGGWCCY	1 cut(s)	420
PscI	ACATGT	1 cut(s)	101
PshAI	GACNNNNGTC	1 cut(s)	350
Psp124BI	GAGCTC	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	420
PspFI	CCCAGC	2 cut(s)	260, 622
PspN4I	GGNNCC	2 cut(s)	80, 422
PspPI	GGNCC	4 cut(s)	46, 59, 420, 599
PspPPI	RGGWCCY	1 cut(s)	420
PvuI	CGATCG	1 cut(s)	187
PvuII	CAGCTG	3 cut(s)	410, 452, 626
SacI	GAGCTC	1 cut(s)	597
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	3 cut(s)	35, 243, 252
SatI	GCNGC	2 cut(s)	258, 450
Sau3AI	GATC	3 cut(s)	184, 264, 340
Sau96I	GGNCC	4 cut(s)	46, 59, 420, 599
SchI	GAGTC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	284, 326
SduI	GDGCHC	3 cut(s)	81, 597, 870
SfaNI	GCATC	1 cut(s)	471
SinI	GGWCC	3 cut(s)	46, 420, 599
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	685, 798
SsiI	CCGC	2 cut(s)	171, 177
SspI	AATATT	1 cut(s)	28
SspMI	CTAG	2 cut(s)	383, 425
SstI	GAGCTC	1 cut(s)	597
StyD4I	CCNGG	2 cut(s)	282, 324
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	1 cut(s)	739
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	142, 163, 231
TasI	AATT	2 cut(s)	685, 798
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	35, 243, 252
Tru9I	TTAA	3 cut(s)	35, 243, 252
TscAI	CASTG	1 cut(s)	799
TseFI	GTSAC	6 cut(s)	104, 188, 307, 352, 617, 641
TseI	GCWGC	2 cut(s)	257, 449
Tsp45I	GTSAC	6 cut(s)	104, 188, 307, 352, 617, 641
TspDTI	ATGAA	4 cut(s)	459, 603, 708, 719
TspRI	CASTG	1 cut(s)	799
Van91I	CCANNNNNTGG	1 cut(s)	74
Vha464I	CTTAAG	1 cut(s)	34
VpaK11BI	GGWCC	3 cut(s)	46, 420, 599
XceI	RCATGY	2 cut(s)	105, 542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	688
XmaJI	CCTAGG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	848
XmnI	GAANNNNTTC	2 cut(s)	128, 292
XspI	CTAG	2 cut(s)	383, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.