Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Forward (+)

16431079 .. 16435283

Gene Structure 4205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1165500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTCGAGGAAGCGGAGGCGGATACGATCGTCACATCACGATTTTCTCACCCGAAGGTCGTCTCTTCCAAGTCGAGTATGCTTTTAAGGCTGTTAAAGCTGCTGGGATCACCTCCATTGGTGTCCGGGGAAAGGATTCAGTATGTGTTGTGACCCAGAAGAAAGTCCCGGACAAGCTTTTGGATCAGACAAGTGTCACACATCTTTTCCCCATCACTAAGTTCGTAGGGTTGCTGGCCACTGGAATGACAGCTGATGCGAGGACCCTAGTTTCGCAAGCAAGGAATGAAGCAGCTGAGTTTCGTTTCAAATATGGATATGAGATGCCCGTGGATGTGTTGGCTAAATGGATTGCAGACAAATCACAAATCTACACTCAACATGCTTACATGAGGCCACTTGGAGTAGTGGCTATGGTTTTGGGCATTGATGAAGAGCTCGGACCTCAACTCTACAAGTGTGACCCAGCTGGCCATTACTTTGGTCACAAGGCTACAAGTGCTGGATTGAAAGAGCAAGAGGCCATCAATTTCTTGGAGAAGAAAATGAAGAATGAGCCTTCATTCTCTTACGACGAGACTGTGCAGACTTGTATTTCTGCCCTGCAATCAGTTCTCCAAGAGGATTTCAAGGCCACCGAAATTGAGGTTGGAGTGGTGGTAAAGGAGAACCCTGTCTTCAGAGTGTTGTCTACCGAAGAGATTGATGAGCACTTGACTGCTATAAGTGAGCGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

247

Amino Acids

27.28

Weight (kDa)

5.75

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	9 - 31	3.8e-15	Proteasome subunit A N-terminal signature
Proteasome	PF00227	36 - 220	5.4e-51	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	692
AciI	CCGC	2 cut(s)	15, 21
AclWI	GGATC	2 cut(s)	116, 192
AcoI	YGGCCR	2 cut(s)	237, 472
AcuI	CTGAAG	1 cut(s)	664
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	310, 511, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	6 cut(s)	101, 178, 254, 296, 439, 470
AluI	AGCT	6 cut(s)	101, 178, 254, 296, 439, 470
Alw21I	GWGCWC	2 cut(s)	441, 714
Alw26I	GTCTC	3 cut(s)	68, 572, 729
AlwI	GGATC	2 cut(s)	116, 192
AoxI	GGCC	5 cut(s)	237, 395, 472, 522, 633
ApeKI	GCWGC	2 cut(s)	101, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	256, 288
Asp700I	GAANNNNTTC	1 cut(s)	136
AspS9I	GGNCC	2 cut(s)	264, 443
AsuC2I	CCSGG	2 cut(s)	128, 170
AsuHPI	GGTGA	2 cut(s)	42, 103
AvaII	GGWCC	2 cut(s)	264, 443
BaeI	ACNNNNGTAYC	2 cut(s)	16, 49
BalI	TGGCCA	2 cut(s)	239, 474
BanII	GRGCYC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	670
Bbv12I	GWGCWC	2 cut(s)	441, 714
BbvI	GCAGC	2 cut(s)	88, 305
BccI	CCATC	2 cut(s)	221, 533
BciVI	GTATCC	1 cut(s)	17
BcnI	CCSGG	2 cut(s)	128, 170
BcoDI	GTCTC	3 cut(s)	68, 572, 729
BfaI	CTAG	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	102, 294
BlsI	GCNGC	2 cut(s)	103, 295
Bme1390I	CCNGG	2 cut(s)	128, 170
Bme18I	GGWCC	2 cut(s)	264, 443
BmgT120I	GGNCC	2 cut(s)	264, 443
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	128, 170
BmsI	GCATC	2 cut(s)	247, 315
BoxI	GACNNNNGTC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	670
BpuMI	CCSGG	2 cut(s)	128, 170
BsaJI	CCNNGG	2 cut(s)	127, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	127, 330
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	88, 305
BseYI	CCCAGC	2 cut(s)	104, 466
BsgI	GTGCAG	1 cut(s)	605
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	5 cut(s)	239, 397, 474, 524, 635
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	2 cut(s)	441, 714
BsiSI	CCGG	2 cut(s)	127, 170
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	68, 572, 729
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	5 cut(s)	239, 397, 474, 524, 635
Bsp1286I	GDGCHC	2 cut(s)	441, 714
Bsp143I	GATC	3 cut(s)	28, 108, 184
BspACI	CCGC	2 cut(s)	15, 21
BspANI	GGCC	5 cut(s)	239, 397, 474, 524, 635
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	116, 192
BspQI	GCTCTTC	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	127, 330
BssMI	GATC	3 cut(s)	28, 108, 184
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	3 cut(s)	71, 429, 693
BstC8I	GCNNGC	3 cut(s)	237, 279, 472
BstDEI	CTNAG	2 cut(s)	219, 297
BstDSI	CCRYGG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	3 cut(s)	31, 111, 187
BstMAI	GTCTC	3 cut(s)	68, 572, 729
BstMBI	GATC	3 cut(s)	28, 108, 184
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 500
BstNSI	RCATGY	1 cut(s)	386
BstPAI	GACNNNNGTC	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	126, 168
BstV1I	GCAGC	2 cut(s)	88, 305
BstV2I	GAAGAC	1 cut(s)	670
BstXI	CCANNNNNNTGG	1 cut(s)	482
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	5 cut(s)	239, 397, 474, 524, 635
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	3 cut(s)	237, 279, 472
Cfr13I	GGNCC	2 cut(s)	264, 443
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	2 cut(s)	383, 391
DdeI	CTNAG	2 cut(s)	219, 297
DpnI	GATC	3 cut(s)	30, 110, 186
DpnII	GATC	3 cut(s)	28, 108, 184
EaeI	YGGCCR	2 cut(s)	237, 472
Eam1104I	CTCTTC	3 cut(s)	71, 429, 693
EarI	CTCTTC	3 cut(s)	71, 429, 693
EciI	GGCGGA	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	2 cut(s)	264, 443
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	386, 394
FaiI	YATR	8 cut(s)	81, 145, 315, 321, 384, 392, 416, 725
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	382, 390
FblI	GTMKAC	1 cut(s)	692
Fnu4HI	GCNGC	2 cut(s)	102, 294
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	2 cut(s)	102, 294
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	2 cut(s)	102, 294
GsaI	CCCAGC	2 cut(s)	108, 470
HaeIII	GGCC	5 cut(s)	239, 397, 474, 524, 635
HapII	CCGG	2 cut(s)	127, 170
Hin1II	CATG	2 cut(s)	386, 394
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	4, 137
HpaII	CCGG	2 cut(s)	127, 170
HphI	GGTGA	2 cut(s)	42, 103
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	3 cut(s)	189, 443, 683
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	693
Hpy99I	CGWCG	1 cut(s)	578
HpyAV	CCTTC	2 cut(s)	50, 570
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	3 cut(s)	356, 586, 607
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 500
HpyF3I	CTNAG	2 cut(s)	219, 297
Hsp92II	CATG	2 cut(s)	386, 394
Kzo9I	GATC	3 cut(s)	28, 108, 184
LguI	GCTCTTC	1 cut(s)	429
Lsp1109I	GCAGC	2 cut(s)	88, 305
LweI	GCATC	2 cut(s)	247, 315
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	5 cut(s)	32, 151, 196, 461, 485
MalI	GATC	3 cut(s)	30, 110, 186
MboI	GATC	3 cut(s)	28, 108, 184
MboII	GAAGA	7 cut(s)	58, 172, 446, 553, 562, 670, 710
MhlI	GDGCHC	2 cut(s)	441, 714
MlsI	TGGCCA	2 cut(s)	239, 474
MluCI	AATT	2 cut(s)	529, 642
MluNI	TGGCCA	2 cut(s)	239, 474
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	8 cut(s)	11, 124, 255, 387, 456, 514, 616, 640
Mox20I	TGGCCA	2 cut(s)	239, 474
MroXI	GAANNNNTTC	1 cut(s)	136
MscI	TGGCCA	2 cut(s)	239, 474
MseI	TTAA	2 cut(s)	87, 96
MslI	CAYNNNNRTG	1 cut(s)	245
Msp20I	TGGCCA	2 cut(s)	239, 474
MspA1I	CMGCKG	3 cut(s)	254, 296, 470
MspI	CCGG	2 cut(s)	127, 170
MspR9I	CCNGG	2 cut(s)	128, 170
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 500
NciI	CCSGG	2 cut(s)	128, 170
NdeII	GATC	3 cut(s)	28, 108, 184
NlaIII	CATG	2 cut(s)	386, 394
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	5 cut(s)	32, 151, 196, 461, 485
NspI	RCATGY	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	103, 295
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	264
PshAI	GACNNNNGTC	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	264
PspFI	CCCAGC	2 cut(s)	104, 466
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	264, 443
PspPPI	RGGWCCY	1 cut(s)	264
PvuI	CGATCG	1 cut(s)	31
PvuII	CAGCTG	3 cut(s)	254, 296, 470
RseI	CAYNNNNRTG	1 cut(s)	245
SacI	GAGCTC	1 cut(s)	441
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	87, 96
SatI	GCNGC	2 cut(s)	102, 294
Sau3AI	GATC	3 cut(s)	28, 108, 184
Sau96I	GGNCC	2 cut(s)	264, 443
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	128, 170
SduI	GDGCHC	2 cut(s)	441, 714
SfaNI	GCATC	2 cut(s)	247, 315
SinI	GGWCC	2 cut(s)	264, 443
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	529, 642
SsiI	CCGC	2 cut(s)	15, 21
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	126, 168
TaaI	ACNGT	1 cut(s)	583
TaqI	TCGA	2 cut(s)	7, 75
TasI	AATT	2 cut(s)	529, 642
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	87, 96
Tru9I	TTAA	2 cut(s)	87, 96
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	5 cut(s)	32, 151, 196, 461, 485
TseI	GCWGC	2 cut(s)	101, 293
Tsp45I	GTSAC	5 cut(s)	32, 151, 196, 461, 485
TspDTI	ATGAA	4 cut(s)	303, 447, 552, 563
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	264, 443
XceI	RCATGY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	692
XmnI	GAANNNNTTC	1 cut(s)	136
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.