Rmu_sc0020926.1_g000001

Proteasome subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020926.1
OG0010140
Physical Location & Seq
Reverse (-)
2212 .. 3349
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020926.1_g000001.1.cds

Sequence Viewer

Length: 207 bp
atgagaccactgggagtagtcgctatggtgttgggtgttgatgaagagaccggacctcaactctataagtgtgacccagctggtcattactttggcgatctctttaccgttagatttgtggattgtcactttgatgagacagtcttcccgccattaggggaagataagaacatcaccgttcttgatgaacgatgtgaattaacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome Proteasome_A_N

Protein Analysis

68

Amino Acids

7.65

Weight (kDa)

4.32

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 155
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 2 cut(s) 41, 131
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 166
AvaII GGWCC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 41, 131
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 155
BseNI ACTGG 1 cut(s) 15
BseYI CCCAGC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 155
BsmAI GTCTC 2 cut(s) 41, 131
Bso31I GGTCTC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 15
BssMI GATC 1 cut(s) 97
Bst4CI ACNGT 3 cut(s) 109, 142, 178
Bst6I CTCTTC 1 cut(s) 39
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 2 cut(s) 41, 131
BstMBI GATC 1 cut(s) 97
BstV2I GAAGAC 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 53
CviAII CATG 1 cut(s) 204
CviJI RGCY 1 cut(s) 80
CviKI_1 RGCY 1 cut(s) 80
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 53
FaeI CATG 1 cut(s) 207
FaiI YATR 3 cut(s) 26, 66, 205
FatI CATG 1 cut(s) 203
FauI CCCGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 80
HapII CCGG 1 cut(s) 51
Hin1II CATG 1 cut(s) 207
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 109, 142, 178
Hsp92II CATG 1 cut(s) 207
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 3 cut(s) 64, 66, 90
MaeIII GTNAC 2 cut(s) 71, 125
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 3 cut(s) 56, 136, 173
MluCI AATT 1 cut(s) 197
MnlI CCTC 1 cut(s) 66
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 1 cut(s) 51
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 71, 125
PspFI CCCAGC 1 cut(s) 76
PspPI GGNCC 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 200
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 53
SetI ASST 2 cut(s) 58, 82
SgeI CNNG 6 cut(s) 23, 63, 89, 93, 160, 194
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 1 cut(s) 197
SsiI CCGC 1 cut(s) 149
TaaI ACNGT 3 cut(s) 109, 142, 178
TasI AATT 1 cut(s) 197
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 2 cut(s) 71, 125
Tsp45I GTSAC 2 cut(s) 71, 125
TspDTI ATGAA 2 cut(s) 57, 201
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.