Prupe.3G038700_v2.0.a1

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0010140
Physical Location & Seq
Forward (+)
2787039 .. 2791053
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G038700.1

Sequence Viewer

Length: 741 bp
ATGAGTCGTGGAAGTGGAGGCGGATATGATCGTCACATCACGATTTTCTCGCCGGAAGGCCGTCTATTTCAAGTCGAGTATGCATTTAAGGCTGTTAAGGCTGCTGGGATCACCTCAATTGGTGTCCGGGGAAAGGATTCCGTATGTGTTGTGACTCAGAAGAAAGTCCCGGACAAGCTTTTGGATCAGACAAGTGTCACACATCTTTTCCCCATCACAAAGTTCCTAGGGTTGCTGGCTACTGGCATGACAGCTGATGCAAGGACCCTAGTTCAGCAAGCAAGGAATGAAGCAGCTGAGTTTCGATTCAAATATGGATACGAGATGCCGGTAGACGTACTGGCTAGATGGATTGCAGACAAATCACAAATCTATACTCAACATGCTTATATGAGACCCCTTGGAGTAGTTGCTATGGTTTTGGGTATTGATGAAGAGTTCGGACCTCAACTCTATAAGTGTGACCCAGCTGGCCATTACTTTGGTCACAAGGCCACAAGTGCTGGATTGAAAGAACAAGAGGCAATCAATTTCTTGGAGAAGAAAATGAAGAATGATCCATTATTTACCTATGACGAGACTGTGCAGACTGCAATTTCTGCCCTGCAATCAGTTCTGCAAGAGGATTTCAAGGCCAATGAAATTGAGGTTGGAGTGGTGGTAAAGGAGAATCCTGTCTTTAGAGTGTTGTCGACCGACGAGATTGATGAGCACTTGACTGCTATAAGCGAGCGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome Proteasome_A_N

Protein Analysis

247

Amino Acids

27.39

Weight (kDa)

5.74

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 333, 692
AciI CCGC 1 cut(s) 21
AclWI GGATC 3 cut(s) 116, 192, 551
AcoI YGGCCR 1 cut(s) 472
AfaI GTAC 1 cut(s) 339
AfiI CCNNNNNNNGG 1 cut(s) 133
AgsI TTSAA 4 cut(s) 71, 310, 511, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 633, 665
AluBI AGCT 4 cut(s) 178, 254, 296, 470
AluI AGCT 4 cut(s) 178, 254, 296, 470
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 3 cut(s) 388, 572, 729
AlwI GGATC 3 cut(s) 116, 192, 551
AoxI GGCC 4 cut(s) 58, 472, 492, 633
ApeKI GCWGC 2 cut(s) 101, 293
Asp700I GAANNNNTTC 1 cut(s) 136
AspA2I CCTAGG 1 cut(s) 226
AspS9I GGNCC 2 cut(s) 264, 443
AsuC2I CCSGG 2 cut(s) 128, 170
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 2 cut(s) 264, 443
AvrII CCTAGG 1 cut(s) 226
BalI TGGCCA 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 2 cut(s) 88, 305
BccI CCATC 2 cut(s) 221, 342
BceAI ACGGC 1 cut(s) 45
BciVI GTATCC 1 cut(s) 311
BcnI CCSGG 2 cut(s) 128, 170
BcoDI GTCTC 3 cut(s) 388, 572, 729
BfaI CTAG 3 cut(s) 227, 269, 345
BfuI GTATCC 1 cut(s) 311
BisI GCNGC 2 cut(s) 102, 294
BlnI CCTAGG 1 cut(s) 226
BlsI GCNGC 2 cut(s) 103, 295
Bme1390I CCNGG 2 cut(s) 128, 170
Bme18I GGWCC 2 cut(s) 264, 443
BmgT120I GGNCC 2 cut(s) 264, 443
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 128, 170
BmsI GCATC 2 cut(s) 247, 315
BoxI GACNNNNGTC 1 cut(s) 194
BpuMI CCSGG 2 cut(s) 128, 170
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 3 cut(s) 127, 226, 400
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 2 cut(s) 247, 345
BseDI CCNNGG 3 cut(s) 127, 226, 400
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 170, 288
BseNI ACTGG 2 cut(s) 247, 345
BseXI GCAGC 2 cut(s) 88, 305
BseYI CCCAGC 2 cut(s) 104, 466
BsgI GTGCAG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 696
BshFI GGCC 4 cut(s) 60, 474, 494, 635
BsiEI CGRYCG 1 cut(s) 696
BsiHKAI GWGCWC 1 cut(s) 714
BsiSI CCGG 4 cut(s) 53, 127, 170, 329
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 3 cut(s) 388, 572, 729
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 4 cut(s) 60, 474, 494, 635
Bso31I GGTCTC 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 714
Bsp143I GATC 4 cut(s) 28, 108, 184, 556
BspACI CCGC 1 cut(s) 21
BspANI GGCC 4 cut(s) 60, 474, 494, 635
BspCNI CTCAG 2 cut(s) 169, 289
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 3 cut(s) 116, 192, 551
BspTNI GGTCTC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 2 cut(s) 247, 345
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 3 cut(s) 127, 226, 400
BssMI GATC 4 cut(s) 28, 108, 184, 556
BssT1I CCWWGG 2 cut(s) 226, 400
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 1 cut(s) 429
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 4 cut(s) 237, 279, 472, 731
BstDEI CTNAG 2 cut(s) 156, 297
BstKTI GATC 4 cut(s) 31, 111, 187, 559
BstMAI GTCTC 3 cut(s) 388, 572, 729
BstMBI GATC 4 cut(s) 28, 108, 184, 556
BstMCI CGRYCG 1 cut(s) 696
BstMWI GCNNNNNNNGC 4 cut(s) 89, 98, 500, 599
BstNSI RCATGY 1 cut(s) 386
BstPAI GACNNNNGTC 1 cut(s) 194
BstSCI CCNGG 2 cut(s) 126, 168
BstV1I GCAGC 2 cut(s) 88, 305
BstXI CCANNNNNNTGG 1 cut(s) 482
BsuI GTATCC 1 cut(s) 311
BsuRI GGCC 4 cut(s) 60, 474, 494, 635
Cac8I GCNNGC 4 cut(s) 237, 279, 472, 731
Cfr10I RCCGGY 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 264, 443
Csp6I GTAC 1 cut(s) 338
CviAII CATG 2 cut(s) 247, 383
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 156, 297
DpnI GATC 4 cut(s) 30, 110, 186, 558
DpnII GATC 4 cut(s) 28, 108, 184, 556
EaeI YGGCCR 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
EciI GGCGGA 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 226, 400
Eco31I GGTCTC 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 264, 443
EcoO109I RGGNCCY 1 cut(s) 264
EcoT14I CCWWGG 2 cut(s) 226, 400
EcoT22I ATGCAT 1 cut(s) 85
ErhI CCWWGG 2 cut(s) 226, 400
FaeI CATG 2 cut(s) 250, 386
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 246, 382
FblI GTMKAC 2 cut(s) 333, 692
Fnu4HI GCNGC 2 cut(s) 102, 294
Fsp4HI GCNGC 2 cut(s) 102, 294
FspBI CTAG 3 cut(s) 227, 269, 345
GluI GCNGC 2 cut(s) 102, 294
GsaI CCCAGC 2 cut(s) 108, 470
HaeIII GGCC 4 cut(s) 60, 474, 494, 635
HapII CCGG 4 cut(s) 53, 127, 170, 329
Hin1II CATG 2 cut(s) 250, 386
HincII GTYRAC 1 cut(s) 693
HindII GTYRAC 1 cut(s) 693
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 5 cut(s) 4, 137, 154, 306, 670
HpaII CCGG 4 cut(s) 53, 127, 170, 329
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 334, 693
Hpy188I TCNGA 3 cut(s) 159, 189, 443
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 2 cut(s) 334, 693
Hpy99I CGWCG 1 cut(s) 701
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 7 cut(s) 83, 260, 356, 586, 593, 607, 619
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 98, 500, 599
HpyF3I CTNAG 2 cut(s) 156, 297
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 2 cut(s) 250, 386
Kzo9I GATC 4 cut(s) 28, 108, 184, 556
Lsp1109I GCAGC 2 cut(s) 88, 305
LweI GCATC 2 cut(s) 247, 315
MaeI CTAG 3 cut(s) 227, 269, 345
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 5 cut(s) 32, 151, 196, 461, 485
MalI GATC 4 cut(s) 30, 110, 186, 558
MboI GATC 4 cut(s) 28, 108, 184, 556
MboII GAAGA 4 cut(s) 172, 446, 553, 562
MfeI CAATTG 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 714
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 4 cut(s) 117, 529, 594, 642
MluNI TGGCCA 1 cut(s) 474
MlyI GAGTC 2 cut(s) 13, 148
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 6 cut(s) 11, 124, 456, 514, 616, 640
Mox20I TGGCCA 1 cut(s) 474
Mph1103I ATGCAT 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 136
MscI TGGCCA 1 cut(s) 474
MseI TTAA 2 cut(s) 87, 96
Msp20I TGGCCA 1 cut(s) 474
MspA1I CMGCKG 3 cut(s) 254, 296, 470
MspI CCGG 4 cut(s) 53, 127, 170, 329
MspR9I CCNGG 2 cut(s) 128, 170
MunI CAATTG 1 cut(s) 117
MwoI GCNNNNNNNGC 4 cut(s) 89, 98, 500, 599
NciI CCSGG 2 cut(s) 128, 170
NdeII GATC 4 cut(s) 28, 108, 184, 556
NlaIII CATG 2 cut(s) 250, 386
NlaIV GGNNCC 1 cut(s) 266
NmuCI GTSAC 5 cut(s) 32, 151, 196, 461, 485
NsiI ATGCAT 1 cut(s) 85
NspI RCATGY 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 136
PfeI GAWTC 3 cut(s) 137, 306, 670
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 2 cut(s) 103, 295
PleI GAGTC 2 cut(s) 12, 148
PpsI GAGTC 2 cut(s) 12, 148
PpuMI RGGWCCY 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 194
Psp5II RGGWCCY 1 cut(s) 264
PspFI CCCAGC 2 cut(s) 104, 466
PspN4I GGNNCC 1 cut(s) 266
PspPI GGNCC 2 cut(s) 264, 443
PspPPI RGGWCCY 1 cut(s) 264
PvuII CAGCTG 3 cut(s) 254, 296, 470
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SalI GTCGAC 1 cut(s) 691
SaqAI TTAA 2 cut(s) 87, 96
SatI GCNGC 2 cut(s) 102, 294
Sau3AI GATC 4 cut(s) 28, 108, 184, 556
Sau96I GGNCC 2 cut(s) 264, 443
SchI GAGTC 2 cut(s) 13, 148
ScrFI CCNGG 2 cut(s) 128, 170
SduI GDGCHC 1 cut(s) 714
SetI ASST 9 cut(s) 116, 180, 256, 298, 339, 448, 472, 572, 651
SfaNI GCATC 2 cut(s) 247, 315
SinI GGWCC 2 cut(s) 264, 443
Sse9I AATT 4 cut(s) 117, 529, 594, 642
SsiI CCGC 1 cut(s) 21
SspMI CTAG 3 cut(s) 227, 269, 345
StyD4I CCNGG 2 cut(s) 126, 168
StyI CCWWGG 2 cut(s) 226, 400
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 75, 304, 692
TaqII GACCGA 1 cut(s) 710
TasI AATT 4 cut(s) 117, 529, 594, 642
TfiI GAWTC 3 cut(s) 137, 306, 670
Tru1I TTAA 2 cut(s) 87, 96
Tru9I TTAA 2 cut(s) 87, 96
TseFI GTSAC 5 cut(s) 32, 151, 196, 461, 485
TseI GCWGC 2 cut(s) 101, 293
Tsp45I GTSAC 5 cut(s) 32, 151, 196, 461, 485
TspDTI ATGAA 4 cut(s) 303, 447, 563, 654
TspGWI ACGGA 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 264, 443
XceI RCATGY 1 cut(s) 386
XmaJI CCTAGG 1 cut(s) 226
XmiI GTMKAC 2 cut(s) 333, 692
XmnI GAANNNNTTC 1 cut(s) 136
XspI CTAG 3 cut(s) 227, 269, 345
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.