Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Forward (+)

7889733 .. 7894305

Gene Structure 4573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACTATTGCACATGAGGATCCTCTTTATGAAGATTTAGAGGATCAATCAATTATGTTTGTTCATTTGTACATCGTGCGGTCAGTTTTTATTAGAAACTATTTATATTTAATTTTAGAGACCCAAACAAATGCGATACAAGTAACATTGAGATCCATCGCAAAACCCGCCCCATGCAACGCCGTCGTATGTTCAAGCATGAGTCGAGGAAGCGGAGGCGGATACGATCGCCACATCACGATTTTCTCACCCGAAGGTCGTCTCTTCCAAGTCGAGTATGCTTTTAAGGCTGTTAAGGCTGCTGGGATCACCTCAATTGGTGTCCGGGGAAAGGATTCCGTATGTGTTGTGACTCAGAAGAAAGTTCCGGACAAGCTTTTCGATCAGACAAGTGTCACACATCTTTTCCCCATCACAAAGTTCCTAGGGTTGCTGGCTACTGGCATGACAGCTGATGCGAGGACCCTCGTTTCTCAAGCAAGGAATGAAGCAGCTGAGTTTCGTTTCAAATATGGATACGAGATGCCTGTGGATGTGTTGGCTAAATGGATTGCAGACAAATCACAAATATATACTCAGCATGCTTATATGAGACCACTGGGAGTAGTGGCTATGGTTTTGGGTATTGATGAAGAGCTCGGACCTCAGCTCTACAAGTGCGACCCAGCCGGCCATTATTTTGGTCACAAGGCGACAAGTGCTGGATCGAAAGAGCAAGAGGCCATTAATTTCTTGGAGAAGAAAATGAAGAATGAACCTTCATTCTCTTATGACGAGACTGTGCAGACTTGTGTTTCTGCCCTGCAATCAGTTCTGCAAGAGGATTTCAAGGCCACTGAAATTGAGGTTGGAGTGGTGGTAAAGGAGAATCCAGTCTTCAGAGTGCTGTCCACCGAAGAGATTGATGAGCACTTGACTGCTATAAGTGAGCGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

313

Amino Acids

34.83

Weight (kDa)

5.57

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	4 cut(s)	79, 168, 213, 219
AclWI	GGATC	6 cut(s)	14, 27, 51, 147, 314, 712
AcoI	YGGCCR	1 cut(s)	670
AcuI	CTGAAG	1 cut(s)	862
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	195, 508, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	831, 863
AluBI	AGCT	5 cut(s)	376, 452, 494, 637, 649
AluI	AGCT	5 cut(s)	376, 452, 494, 637, 649
Alw21I	GWGCWC	2 cut(s)	639, 912
Alw26I	GTCTC	5 cut(s)	113, 266, 586, 770, 927
AlwI	GGATC	6 cut(s)	14, 27, 51, 147, 314, 712
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	3 cut(s)	670, 720, 831
ApeKI	GCWGC	2 cut(s)	299, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
AseI	ATTAAT	1 cut(s)	726
Asp700I	GAANNNNTTC	1 cut(s)	334
AspA2I	CCTAGG	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	462, 641
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	2 cut(s)	240, 301
AvaII	GGWCC	2 cut(s)	462, 641
AvrII	CCTAGG	1 cut(s)	424
BamHI	GGATCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	868
Bbv12I	GWGCWC	2 cut(s)	639, 912
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	2 cut(s)	286, 503
BccI	CCATC	2 cut(s)	164, 419
BceAI	ACGGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciVI	GTATCC	2 cut(s)	215, 509
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	5 cut(s)	113, 266, 586, 770, 927
BfaI	CTAG	1 cut(s)	425
BfuI	GTATCC	2 cut(s)	215, 509
BisI	GCNGC	2 cut(s)	300, 492
BlnI	CCTAGG	1 cut(s)	424
BlsI	GCNGC	2 cut(s)	301, 493
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	2 cut(s)	462, 641
BmgT120I	GGNCC	2 cut(s)	462, 641
BmiI	GGNNCC	2 cut(s)	21, 464
BmrFI	CCNGG	1 cut(s)	326
BmrI	ACTGGG	1 cut(s)	608
BmsI	GCATC	2 cut(s)	445, 513
BmuI	ACTGGG	1 cut(s)	608
BoxI	GACNNNNGTC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	868
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	326
BsaI	GGTCTC	2 cut(s)	113, 586
BsaJI	CCNNGG	2 cut(s)	325, 424
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	668
Bse1I	ACTGG	3 cut(s)	445, 603, 872
BseAI	TCCGGA	1 cut(s)	367
BseDI	CCNNGG	2 cut(s)	325, 424
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	4 cut(s)	368, 486, 590, 659
BseNI	ACTGG	3 cut(s)	445, 603, 872
BseXI	GCAGC	2 cut(s)	286, 503
BseYI	CCCAGC	2 cut(s)	302, 664
BsgI	GTGCAG	1 cut(s)	803
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	3 cut(s)	672, 722, 833
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	639, 912
BsiSI	CCGG	3 cut(s)	325, 368, 669
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	5 cut(s)	113, 266, 586, 770, 927
BsmBI	CGTCTC	1 cut(s)	266
BsnI	GGCC	3 cut(s)	672, 722, 833
Bso31I	GGTCTC	2 cut(s)	113, 586
Bsp1286I	GDGCHC	2 cut(s)	639, 912
Bsp13I	TCCGGA	1 cut(s)	367
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	7 cut(s)	19, 43, 152, 226, 306, 382, 704
BspACI	CCGC	4 cut(s)	79, 168, 213, 219
BspANI	GGCC	3 cut(s)	672, 722, 833
BspCNI	CTCAG	4 cut(s)	367, 487, 589, 658
BspEI	TCCGGA	1 cut(s)	367
BspLI	GGNNCC	2 cut(s)	21, 464
BspPI	GGATC	6 cut(s)	14, 27, 51, 147, 314, 712
BspQI	GCTCTTC	1 cut(s)	627
BspTNI	GGTCTC	2 cut(s)	113, 586
BsrFI	RCCGGY	1 cut(s)	668
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	445, 603, 872
BssAI	RCCGGY	1 cut(s)	668
BssECI	CCNNGG	2 cut(s)	325, 424
BssMI	GATC	7 cut(s)	19, 43, 152, 226, 306, 382, 704
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	781
Bst6I	CTCTTC	3 cut(s)	269, 627, 891
BstAUI	TGTACA	1 cut(s)	69
BstC8I	GCNNGC	3 cut(s)	435, 582, 670
BstDEI	CTNAG	4 cut(s)	354, 495, 576, 645
BstF5I	GGATG	1 cut(s)	538
BstKTI	GATC	7 cut(s)	22, 46, 155, 229, 309, 385, 707
BstMAI	GTCTC	5 cut(s)	113, 266, 586, 770, 927
BstMBI	GATC	7 cut(s)	19, 43, 152, 226, 306, 382, 704
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 287, 296, 698
BstNSI	RCATGY	1 cut(s)	584
BstPAI	GACNNNNGTC	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	324
BstV1I	GCAGC	2 cut(s)	286, 503
BstV2I	GAAGAC	1 cut(s)	868
BstX2I	RGATCY	2 cut(s)	19, 152
BstXI	CCANNNNNNTGG	1 cut(s)	680
BstYI	RGATCY	2 cut(s)	19, 152
BsuI	GTATCC	2 cut(s)	215, 509
BsuRI	GGCC	3 cut(s)	672, 722, 833
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	538
BtsIMutI	CAGTG	2 cut(s)	596, 834
Cac8I	GCNNGC	3 cut(s)	435, 582, 670
Cfr10I	RCCGGY	1 cut(s)	668
Cfr13I	GGNCC	2 cut(s)	462, 641
Csp6I	GTAC	1 cut(s)	70
CspCI	CAANNNNNGTGG	2 cut(s)	823, 858
CviAII	CATG	5 cut(s)	14, 174, 199, 445, 581
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	4 cut(s)	354, 495, 576, 645
DpnI	GATC	7 cut(s)	21, 45, 154, 228, 308, 384, 706
DpnII	GATC	7 cut(s)	19, 43, 152, 226, 306, 382, 704
EaeI	YGGCCR	1 cut(s)	670
Eam1104I	CTCTTC	3 cut(s)	269, 627, 891
EarI	CTCTTC	3 cut(s)	269, 627, 891
EciI	GGCGGA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	637
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	639
Eco31I	GGTCTC	2 cut(s)	113, 586
Eco47I	GGWCC	2 cut(s)	462, 641
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	862
EcoICRI	GAGCTC	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	424
Esp3I	CGTCTC	1 cut(s)	266
FaeI	CATG	5 cut(s)	17, 177, 202, 448, 584
FatI	CATG	5 cut(s)	13, 173, 198, 444, 580
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	300, 492
FokI	GGATG	1 cut(s)	545
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	2 cut(s)	300, 492
FspBI	CTAG	1 cut(s)	425
GluI	GCNGC	2 cut(s)	300, 492
GsaI	CCCAGC	2 cut(s)	306, 668
HaeIII	GGCC	3 cut(s)	672, 722, 833
HapII	CCGG	3 cut(s)	325, 368, 669
Hin1II	CATG	5 cut(s)	17, 177, 202, 448, 584
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	4 cut(s)	202, 335, 352, 868
HpaII	CCGG	3 cut(s)	325, 368, 669
HphI	GGTGA	2 cut(s)	240, 301
Hpy166II	GTNNAC	1 cut(s)	891
Hpy188I	TCNGA	4 cut(s)	357, 387, 641, 881
Hpy188III	TCNNGA	2 cut(s)	238, 368
Hpy8I	GTNNAC	1 cut(s)	891
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	248, 768
HpyCH4III	ACNGT	1 cut(s)	781
HpyCH4V	TGCA	6 cut(s)	11, 177, 554, 784, 805, 817
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 287, 296, 698
HpyF3I	CTNAG	4 cut(s)	354, 495, 576, 645
Hsp92II	CATG	5 cut(s)	17, 177, 202, 448, 584
Kpn2I	TCCGGA	1 cut(s)	367
KroI	GCCGGC	1 cut(s)	668
KroNI	GCCGGC	1 cut(s)	670
Kzo9I	GATC	7 cut(s)	19, 43, 152, 226, 306, 382, 704
LguI	GCTCTTC	1 cut(s)	627
Lsp1109I	GCAGC	2 cut(s)	286, 503
LweI	GCATC	2 cut(s)	445, 513
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	4 cut(s)	142, 349, 394, 683
MalI	GATC	7 cut(s)	21, 45, 154, 228, 308, 384, 706
MboI	GATC	7 cut(s)	19, 43, 152, 226, 306, 382, 704
MboII	GAAGA	8 cut(s)	44, 256, 370, 644, 751, 760, 868, 908
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	2 cut(s)	19, 152
MhlI	GDGCHC	2 cut(s)	639, 912
MluCI	AATT	5 cut(s)	51, 111, 315, 727, 840
MlyI	GAGTC	2 cut(s)	211, 346
MmeI	TCCRAC	1 cut(s)	829
MroI	TCCGGA	1 cut(s)	367
MroNI	GCCGGC	1 cut(s)	668
MroXI	GAANNNNTTC	1 cut(s)	334
MseI	TTAA	4 cut(s)	110, 285, 294, 726
MspA1I	CMGCKG	2 cut(s)	452, 494
MspI	CCGG	3 cut(s)	325, 368, 669
MspR9I	CCNGG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	315
MwoI	GCNNNNNNNGC	4 cut(s)	167, 287, 296, 698
NaeI	GCCGGC	1 cut(s)	670
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	7 cut(s)	19, 43, 152, 226, 306, 382, 704
NgoMIV	GCCGGC	1 cut(s)	668
NlaIII	CATG	5 cut(s)	17, 177, 202, 448, 584
NlaIV	GGNNCC	2 cut(s)	21, 464
NmuCI	GTSAC	3 cut(s)	349, 394, 683
NspI	RCATGY	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	584
PciSI	GCTCTTC	1 cut(s)	627
PdiI	GCCGGC	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	335, 868
PkrI	GCNGC	2 cut(s)	301, 493
Ple19I	CGATCG	1 cut(s)	229
PleI	GAGTC	2 cut(s)	210, 346
PpsI	GAGTC	2 cut(s)	210, 346
PpuMI	RGGWCCY	1 cut(s)	462
PshAI	GACNNNNGTC	1 cut(s)	392
PshBI	ATTAAT	1 cut(s)	726
Psp124BI	GAGCTC	1 cut(s)	639
Psp5II	RGGWCCY	1 cut(s)	462
PspFI	CCCAGC	2 cut(s)	302, 664
PspN4I	GGNNCC	2 cut(s)	21, 464
PspPI	GGNCC	2 cut(s)	462, 641
PspPPI	RGGWCCY	1 cut(s)	462
PsuI	RGATCY	2 cut(s)	19, 152
PvuI	CGATCG	1 cut(s)	229
PvuII	CAGCTG	2 cut(s)	452, 494
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	4 cut(s)	110, 285, 294, 726
SatI	GCNGC	2 cut(s)	300, 492
Sau3AI	GATC	7 cut(s)	19, 43, 152, 226, 306, 382, 704
Sau96I	GGNCC	2 cut(s)	462, 641
SchI	GAGTC	2 cut(s)	211, 346
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	639, 912
SfaNI	GCATC	2 cut(s)	445, 513
SinI	GGWCC	2 cut(s)	462, 641
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
SphI	GCATGC	1 cut(s)	584
Sse9I	AATT	5 cut(s)	51, 111, 315, 727, 840
SsiI	CCGC	4 cut(s)	79, 168, 213, 219
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	1 cut(s)	781
TaqI	TCGA	4 cut(s)	205, 273, 381, 707
TasI	AATT	5 cut(s)	51, 111, 315, 727, 840
TatI	WGTACW	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	335, 868
Tru1I	TTAA	4 cut(s)	110, 285, 294, 726
Tru9I	TTAA	4 cut(s)	110, 285, 294, 726
TscAI	CASTG	2 cut(s)	603, 841
TseFI	GTSAC	3 cut(s)	349, 394, 683
TseI	GCWGC	2 cut(s)	299, 491
Tsp45I	GTSAC	3 cut(s)	349, 394, 683
TspDTI	ATGAA	7 cut(s)	45, 53, 501, 645, 750, 761, 768
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	2 cut(s)	603, 841
VpaK11BI	GGWCC	2 cut(s)	462, 641
VspI	ATTAAT	1 cut(s)	726
XceI	RCATGY	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XmaJI	CCTAGG	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.