Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Forward (+)

15412437 .. 15423209

Gene Structure 10773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1179900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTCGAGGAAGCGGAGGCGGATACGATCGCCACATCACGATTTTCTCACCCGAAGGTCGTCTCTTCCAAGTCGAGTATGCTTTTAAGGCTGTTAAGGCTGCTGGGATCACCTCAATTGGTGTCCGGGGAAAGGACTCCGTATGTGTTGTGACTCAGAAGAAAGTCCCGGACAAGCTTTTGGATCAGACAAGTGTCACACATCTTTTCCCCATCACAAAGTTCCTAGGGTTGCTGGCTACTGGCATGACAGCTGATGCGAGGACCCTCGTTTCACAAGCAAGGAATGAAGCAGCTGAGTTTCGTTTCAAATATGGATACGAGATGCCTGTGGATGTGTTGGCTAAATGGATTGCAGACAAATCACAAATATATACTCAACATGCTTATATGAGACCACTGGGAGTAGTGGCTATGGTTTTGGGTATTGATGAAGAGGTTGGACCTCAGCTCTACAAGTGCGACCCAGCTGGCCATTATTTTGGTCACAAGGCGACAAGTGCTGGATTGAAAGAGCAAGAGGCCATTAATTTCTTGGAGAAGAAAATGAAGAATGAACCTTCATTCTCTTATGACGAGACTGTGCAGACTTGTATTTCTGCCCTGCAATCAGTTCTGCAAGAGGATTTCAAGGCCACTGAAATTGAGGTTGGAGTGGTGGTAAAGGAGAATCCAGTCTTCAGAGTGCTGTCCACCGAAGAGATTGATGAGCACTTGACTGCTATAAGTGAGCGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

247

Amino Acids

27.28

Weight (kDa)

5.75

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	9 - 31	3.8e-15	Proteasome subunit A N-terminal signature
Proteasome	PF00227	36 - 220	1.1e-50	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	15, 21
AclWI	GGATC	2 cut(s)	116, 192
AcoI	YGGCCR	1 cut(s)	472
AcuI	CTGAAG	1 cut(s)	664
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	310, 511, 631
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	5 cut(s)	178, 254, 296, 451, 470
AluI	AGCT	5 cut(s)	178, 254, 296, 451, 470
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	4 cut(s)	68, 388, 572, 729
AlwI	GGATC	2 cut(s)	116, 192
AoxI	GGCC	3 cut(s)	472, 522, 633
ApeKI	GCWGC	2 cut(s)	101, 293
AseI	ATTAAT	1 cut(s)	528
AspA2I	CCTAGG	1 cut(s)	226
AspS9I	GGNCC	2 cut(s)	264, 443
AsuC2I	CCSGG	2 cut(s)	128, 170
AsuHPI	GGTGA	2 cut(s)	42, 103
AvaII	GGWCC	2 cut(s)	264, 443
AvrII	CCTAGG	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	670
Bbv12I	GWGCWC	1 cut(s)	714
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	88, 305
BccI	CCATC	1 cut(s)	221
BciVI	GTATCC	2 cut(s)	17, 311
BcnI	CCSGG	2 cut(s)	128, 170
BcoDI	GTCTC	4 cut(s)	68, 388, 572, 729
BfaI	CTAG	1 cut(s)	227
BfuI	GTATCC	2 cut(s)	17, 311
BisI	GCNGC	2 cut(s)	102, 294
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	2 cut(s)	103, 295
Bme1390I	CCNGG	2 cut(s)	128, 170
Bme18I	GGWCC	2 cut(s)	264, 443
BmgT120I	GGNCC	2 cut(s)	264, 443
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	128, 170
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	247, 315
BmuI	ACTGGG	1 cut(s)	410
BoxI	GACNNNNGTC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	670
Bpu10I	CCTNAGC	1 cut(s)	447
BpuMI	CCSGG	2 cut(s)	128, 170
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	127, 226
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	247, 405, 674
BseDI	CCNNGG	2 cut(s)	127, 226
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	3 cut(s)	170, 288, 461
BseNI	ACTGG	3 cut(s)	247, 405, 674
BseXI	GCAGC	2 cut(s)	88, 305
BseYI	CCCAGC	2 cut(s)	104, 466
BsgI	GTGCAG	1 cut(s)	605
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	474, 524, 635
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	127, 170
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	4 cut(s)	68, 388, 572, 729
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	474, 524, 635
Bso31I	GGTCTC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	3 cut(s)	28, 108, 184
BspACI	CCGC	2 cut(s)	15, 21
BspANI	GGCC	3 cut(s)	474, 524, 635
BspCNI	CTCAG	3 cut(s)	169, 289, 460
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	2 cut(s)	116, 192
BspTNI	GGTCTC	1 cut(s)	388
BsrI	ACTGG	3 cut(s)	247, 405, 674
BssECI	CCNNGG	2 cut(s)	127, 226
BssMI	GATC	3 cut(s)	28, 108, 184
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	3 cut(s)	71, 429, 693
BstC8I	GCNNGC	2 cut(s)	237, 472
BstDEI	CTNAG	3 cut(s)	156, 297, 447
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	3 cut(s)	31, 111, 187
BstMAI	GTCTC	4 cut(s)	68, 388, 572, 729
BstMBI	GATC	3 cut(s)	28, 108, 184
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 500
BstNSI	RCATGY	1 cut(s)	386
BstPAI	GACNNNNGTC	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	126, 168
BstV1I	GCAGC	2 cut(s)	88, 305
BstV2I	GAAGAC	1 cut(s)	670
BstXI	CCANNNNNNTGG	1 cut(s)	482
BsuI	GTATCC	2 cut(s)	17, 311
BsuRI	GGCC	3 cut(s)	474, 524, 635
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	398, 636
Cac8I	GCNNGC	2 cut(s)	237, 472
Cfr13I	GGNCC	2 cut(s)	264, 443
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	2 cut(s)	247, 383
DdeI	CTNAG	3 cut(s)	156, 297, 447
DpnI	GATC	3 cut(s)	30, 110, 186
DpnII	GATC	3 cut(s)	28, 108, 184
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	3 cut(s)	71, 429, 693
EarI	CTCTTC	3 cut(s)	71, 429, 693
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	264, 443
Eco57I	CTGAAG	1 cut(s)	664
EcoO109I	RGGNCCY	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	250, 386
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	246, 382
Fnu4HI	GCNGC	2 cut(s)	102, 294
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	102, 294
FspBI	CTAG	1 cut(s)	227
GluI	GCNGC	2 cut(s)	102, 294
GsaI	CCCAGC	2 cut(s)	108, 470
HaeIII	GGCC	3 cut(s)	474, 524, 635
HapII	CCGG	2 cut(s)	127, 170
Hin1II	CATG	2 cut(s)	250, 386
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	4 cut(s)	4, 137, 154, 670
HpaII	CCGG	2 cut(s)	127, 170
HphI	GGTGA	2 cut(s)	42, 103
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	3 cut(s)	159, 189, 683
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	693
HpyAV	CCTTC	2 cut(s)	50, 570
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4V	TGCA	4 cut(s)	356, 586, 607, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 500
HpyF3I	CTNAG	3 cut(s)	156, 297, 447
Hsp92II	CATG	2 cut(s)	250, 386
Kzo9I	GATC	3 cut(s)	28, 108, 184
Lsp1109I	GCAGC	2 cut(s)	88, 305
LweI	GCATC	2 cut(s)	247, 315
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	151, 196, 485
MalI	GATC	3 cut(s)	30, 110, 186
MboI	GATC	3 cut(s)	28, 108, 184
MboII	GAAGA	7 cut(s)	58, 172, 446, 553, 562, 670, 710
MfeI	CAATTG	1 cut(s)	117
MhlI	GDGCHC	1 cut(s)	714
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	3 cut(s)	117, 529, 642
MluNI	TGGCCA	1 cut(s)	474
MlyI	GAGTC	3 cut(s)	13, 131, 148
MmeI	TCCRAC	2 cut(s)	421, 631
MnlI	CCTC	9 cut(s)	11, 124, 255, 278, 430, 456, 514, 616, 640
Mox20I	TGGCCA	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	3 cut(s)	87, 96, 528
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	3 cut(s)	254, 296, 470
MspI	CCGG	2 cut(s)	127, 170
MspR9I	CCNGG	2 cut(s)	128, 170
MunI	CAATTG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 500
NciI	CCSGG	2 cut(s)	128, 170
NdeII	GATC	3 cut(s)	28, 108, 184
NlaIII	CATG	2 cut(s)	250, 386
NlaIV	GGNNCC	1 cut(s)	266
NmuCI	GTSAC	3 cut(s)	151, 196, 485
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	670
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	103, 295
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	3 cut(s)	12, 131, 148
PpsI	GAGTC	3 cut(s)	12, 131, 148
PpuMI	RGGWCCY	1 cut(s)	264
PshAI	GACNNNNGTC	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	264
PspFI	CCCAGC	2 cut(s)	104, 466
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	2 cut(s)	264, 443
PspPPI	RGGWCCY	1 cut(s)	264
PvuI	CGATCG	1 cut(s)	31
PvuII	CAGCTG	3 cut(s)	254, 296, 470
SaqAI	TTAA	3 cut(s)	87, 96, 528
SatI	GCNGC	2 cut(s)	102, 294
Sau3AI	GATC	3 cut(s)	28, 108, 184
Sau96I	GGNCC	2 cut(s)	264, 443
SchI	GAGTC	3 cut(s)	13, 131, 148
ScrFI	CCNGG	2 cut(s)	128, 170
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	2 cut(s)	247, 315
SinI	GGWCC	2 cut(s)	264, 443
Sse9I	AATT	3 cut(s)	117, 529, 642
SsiI	CCGC	2 cut(s)	15, 21
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	126, 168
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	583
TaqI	TCGA	2 cut(s)	7, 75
TasI	AATT	3 cut(s)	117, 529, 642
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	3 cut(s)	87, 96, 528
Tru9I	TTAA	3 cut(s)	87, 96, 528
TscAI	CASTG	2 cut(s)	405, 643
TseFI	GTSAC	3 cut(s)	151, 196, 485
TseI	GCWGC	2 cut(s)	101, 293
Tsp45I	GTSAC	3 cut(s)	151, 196, 485
TspDTI	ATGAA	5 cut(s)	303, 447, 552, 563, 570
TspGWI	ACGGA	1 cut(s)	130
TspRI	CASTG	2 cut(s)	405, 643
VpaK11BI	GGWCC	2 cut(s)	264, 443
VspI	ATTAAT	1 cut(s)	528
XceI	RCATGY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.