Rh1AG384600

Proteasome subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0010140
Physical Location & Seq
Forward (+)
61560126 .. 61560452
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG384600.1

Sequence Viewer

Length: 327 bp
ATGTGTTGTGACTCAGAAGAAAGTCCCGGACAAACTTTTGGATCAGACGAGTGTAACCCATCTTGCATGACAGCTGATGCAAGGACTCTGGTATCACAAGCAAGGAATGAAGCAGCTGACTTCCGATTCAAAAATGGATATGAGACATTGGCTAACTGGATTGCAAACAAATCACAAGTCTATACTCAACATGCTTATATGAGACCACTGGGAGTAGTCGCTATGGTGTTGGGTGTTGATGAAGAGACCGGACCTCAACTCTATAAGTGTGACCCAGCTGGTCATTACTTTGGTAAGTGCTGGATTGAAAGAACAAGAGGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome Proteasome_A_N

Protein Analysis

108

Amino Acids

12.04

Weight (kDa)

5.04

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 23 - 98 3.7e-20 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 49
AgsI TTSAA 2 cut(s) 130, 308
AluBI AGCT 3 cut(s) 74, 116, 278
AluI AGCT 3 cut(s) 74, 116, 278
Alw26I GTCTC 3 cut(s) 137, 196, 239
AlwI GGATC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 113
ArsI GACNNNNNNTTYG 2 cut(s) 162, 194
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 1 cut(s) 27
AvaII GGWCC 1 cut(s) 251
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 27
BcoDI GTCTC 3 cut(s) 137, 196, 239
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 27
Bme18I GGWCC 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 27
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 67
BmuI ACTGGG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 27
BsaI GGTCTC 2 cut(s) 196, 239
BsaWI WCCGGW 1 cut(s) 248
Bse1I ACTGG 2 cut(s) 161, 213
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 161, 213
BseXI GCAGC 1 cut(s) 125
BseYI CCCAGC 1 cut(s) 274
BsiSI CCGG 2 cut(s) 27, 249
BslFI GGGAC 1 cut(s) 9
BsmAI GTCTC 3 cut(s) 137, 196, 239
BsmFI GGGAC 1 cut(s) 9
Bso31I GGTCTC 2 cut(s) 196, 239
Bsp143I GATC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 26
BspPI GGATC 1 cut(s) 49
BspTNI GGTCTC 2 cut(s) 196, 239
BsrI ACTGG 2 cut(s) 161, 213
BssMI GATC 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 13
BstKTI GATC 1 cut(s) 44
BstMAI GTCTC 3 cut(s) 137, 196, 239
BstMBI GATC 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 251
CviAII CATG 2 cut(s) 67, 191
CviJI RGCY 4 cut(s) 74, 116, 152, 278
CviKI_1 RGCY 4 cut(s) 74, 116, 152, 278
DdeI CTNAG 1 cut(s) 13
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco31I GGTCTC 2 cut(s) 196, 239
Eco47I GGWCC 1 cut(s) 251
FaeI CATG 2 cut(s) 70, 194
FaiI YATR 8 cut(s) 68, 141, 183, 192, 198, 200, 224, 264
FaqI GGGAC 1 cut(s) 9
FatI CATG 2 cut(s) 66, 190
Fnu4HI GCNGC 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 278
HapII CCGG 2 cut(s) 27, 249
Hin1II CATG 2 cut(s) 70, 194
HinfI GANTC 3 cut(s) 11, 85, 126
HpaII CCGG 2 cut(s) 27, 249
Hpy188I TCNGA 3 cut(s) 16, 46, 125
HpyCH4V TGCA 3 cut(s) 66, 80, 164
HpyF3I CTNAG 1 cut(s) 13
Hsp92II CATG 2 cut(s) 70, 194
Kzo9I GATC 1 cut(s) 41
LpnPI CCDG 8 cut(s) 40, 74, 142, 194, 262, 264, 286, 288
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 67
MaeIII GTNAC 3 cut(s) 8, 53, 269
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 2 cut(s) 29, 254
MluCI AATT 1 cut(s) 322
MlyI GAGTC 2 cut(s) 5, 79
MnlI CCTC 2 cut(s) 264, 311
MseI TTAA 1 cut(s) 325
MspA1I CMGCKG 3 cut(s) 74, 116, 278
MspI CCGG 2 cut(s) 27, 249
MspR9I CCNGG 1 cut(s) 27
NciI CCSGG 1 cut(s) 27
NdeII GATC 1 cut(s) 41
NlaIII CATG 2 cut(s) 70, 194
NmuCI GTSAC 2 cut(s) 8, 269
NspI RCATGY 1 cut(s) 194
PfeI GAWTC 1 cut(s) 126
PfoI TCCNGGA 1 cut(s) 25
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 2 cut(s) 5, 79
PpsI GAGTC 2 cut(s) 5, 79
PspFI CCCAGC 1 cut(s) 274
PspPI GGNCC 1 cut(s) 251
PvuII CAGCTG 3 cut(s) 74, 116, 278
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 41
Sau96I GGNCC 1 cut(s) 251
SchI GAGTC 2 cut(s) 5, 79
ScrFI CCNGG 1 cut(s) 27
SetI ASST 4 cut(s) 76, 118, 256, 280
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 1 cut(s) 251
Sse9I AATT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 25
TasI AATT 1 cut(s) 322
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 1 cut(s) 213
TseFI GTSAC 2 cut(s) 8, 269
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 2 cut(s) 8, 269
TspDTI ATGAA 2 cut(s) 123, 255
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 251
XceI RCATGY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.