Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Reverse (-)

434925 .. 438524

Gene Structure 3600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTCGTGGTAGTGGTGGAGGATACGACCGTCATATCACGATCTTCTCACCCGAAGGTCGTCTTTTCCAAGTCGAATATGCGTTTAAGGCTGTGAAGTCTGCTGGGATTACCTCCATTGGTGTCCGAGGGAAGGATTCAGTATGTGTTGTGACTCAGAAGAAAGTCCCGGACAAGCTTTTGGATCAGACGAGTGTCACCCATCTTTTTCCCATTACAAAGTTCCTGGGGTTGCTCGCTACTGGCATGACAGCTGATGCAAGGACTCTGGTATCACAAGCAAGGAATGAAGCAGCTGACTTCCGATTCAAAAATGGATATGAGATGCCTGTAGATGTATTGGCCAACTGGATTGCAAACAAATCACAAGTCTATACTCAGCATGCTTATATGAGACCACTGGGAGTAGTTGCTATGGTGTTGGGTGTTGATGAAGAGACCGGACCTCAACTCTATAAGTGTGACCCAGCTGGTCATTACTTTGGTCATAAGGCCACAAGTGCTGGATTGAAAGAACAAGAGGCAATTAATTTCTTAGAGAAGAAAATGAAGAATGACCCTTCCTTTACATACGAGGAGACTGTGCAGACTGCCATTTCTGCGCTGCAATCAGTTCTGCAAGAGGATTTTAAGGCCACGGAAATTGAGGTTGGAGTGGTGAGAAAGGAGAATCCCGTTTTTAGAGTGTTGCCCACTGAAGAGATTGATGAGCACTTGACAGCCATAAGTGAGAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

246

Amino Acids

27.24

Weight (kDa)

5.91

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	9 - 31	3.8e-15	Proteasome subunit A N-terminal signature
Proteasome	PF00227	35 - 220	8.8e-52	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	717
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	310, 511
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	4 cut(s)	178, 254, 296, 470
AluI	AGCT	4 cut(s)	178, 254, 296, 470
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	3 cut(s)	388, 431, 572
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	3 cut(s)	342, 492, 633
ApeKI	GCWGC	2 cut(s)	293, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AseI	ATTAAT	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	3 cut(s)	42, 190, 670
AvaII	GGWCC	1 cut(s)	443
BaeI	ACNNNNGTAYC	4 cut(s)	16, 49, 255, 288
BalI	TGGCCA	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	305, 591
BccI	CCATC	1 cut(s)	210
BciT130I	CCWGG	1 cut(s)	227
BciVI	GTATCC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	388, 431, 572
BfmI	CTRYAG	1 cut(s)	330
BfuI	GTATCC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	294, 605
BlsI	GCNGC	2 cut(s)	295, 606
Bme1390I	CCNGG	2 cut(s)	170, 227
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	2 cut(s)	170, 227
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	247, 315
BmuI	ACTGGG	1 cut(s)	410
BoxI	GACNNNNGTC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	170
BsaI	GGTCTC	2 cut(s)	388, 431
BsaJI	CCNNGG	3 cut(s)	127, 226, 636
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	247, 353, 405
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	127, 226, 636
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	170, 392
BseNI	ACTGG	3 cut(s)	247, 353, 405
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	305, 591
BseYI	CCCAGC	2 cut(s)	104, 466
BsgI	GTGCAG	1 cut(s)	605
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	344, 494, 635
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	170, 441
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	388, 431, 572
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	344, 494, 635
Bso31I	GGTCTC	2 cut(s)	388, 431
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	2 cut(s)	42, 184
BspANI	GGCC	3 cut(s)	344, 494, 635
BspCNI	CTCAG	2 cut(s)	169, 391
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	2 cut(s)	388, 431
BsrI	ACTGG	3 cut(s)	247, 353, 405
BssECI	CCNNGG	3 cut(s)	127, 226, 636
BssMI	GATC	2 cut(s)	42, 184
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	32, 583
Bst6I	CTCTTC	2 cut(s)	429, 693
BstC8I	GCNNGC	2 cut(s)	237, 384
BstDEI	CTNAG	3 cut(s)	156, 378, 535
BstDSI	CCRYGG	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	2 cut(s)	45, 187
BstMAI	GTCTC	3 cut(s)	388, 431, 572
BstMBI	GATC	2 cut(s)	42, 184
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	386
BstPAI	GACNNNNGTC	1 cut(s)	194
BstSCI	CCNGG	2 cut(s)	168, 225
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	305, 591
BsuI	GTATCC	1 cut(s)	17
BsuRI	GGCC	3 cut(s)	344, 494, 635
BtgI	CCRYGG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	398, 693
Cac8I	GCNNGC	2 cut(s)	237, 384
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	443
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	2 cut(s)	247, 383
CviJI	RGCY	9 cut(s)	92, 178, 254, 296, 344, 470, 494, 635, 722
CviKI_1	RGCY	9 cut(s)	92, 178, 254, 296, 344, 470, 494, 635, 722
DdeI	CTNAG	3 cut(s)	156, 378, 535
DpnI	GATC	2 cut(s)	44, 186
DpnII	GATC	2 cut(s)	42, 184
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	2 cut(s)	429, 693
EarI	CTCTTC	2 cut(s)	429, 693
Eco31I	GGTCTC	2 cut(s)	388, 431
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	717
EcoRII	CCWGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	250, 386
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	246, 382
Fnu4HI	GCNGC	2 cut(s)	294, 605
Fsp4HI	GCNGC	2 cut(s)	294, 605
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	2 cut(s)	294, 605
GsaI	CCCAGC	2 cut(s)	108, 470
HaeIII	GGCC	3 cut(s)	344, 494, 635
HapII	CCGG	2 cut(s)	170, 441
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	2 cut(s)	250, 386
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	6 cut(s)	4, 137, 154, 265, 306, 670
HpaII	CCGG	2 cut(s)	170, 441
HphI	GGTGA	3 cut(s)	42, 190, 670
Hpy188I	TCNGA	4 cut(s)	128, 159, 189, 305
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	50, 127, 570
HpyCH4III	ACNGT	2 cut(s)	32, 583
HpyCH4V	TGCA	5 cut(s)	260, 356, 586, 607, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
HpyF3I	CTNAG	3 cut(s)	156, 378, 535
Hsp92II	CATG	2 cut(s)	250, 386
HspAI	GCGC	1 cut(s)	602
Kzo9I	GATC	2 cut(s)	42, 184
Lsp1109I	GCAGC	2 cut(s)	305, 591
LweI	GCATC	2 cut(s)	247, 315
MaeIII	GTNAC	3 cut(s)	151, 196, 461
MalI	GATC	2 cut(s)	44, 186
MboI	GATC	2 cut(s)	42, 184
MboII	GAAGA	6 cut(s)	37, 172, 446, 553, 562, 710
MhlI	GDGCHC	1 cut(s)	714
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	3 cut(s)	525, 529, 642
MluNI	TGGCCA	1 cut(s)	344
MlyI	GAGTC	3 cut(s)	13, 148, 259
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	8 cut(s)	14, 122, 124, 456, 514, 568, 616, 640
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
MseI	TTAA	3 cut(s)	87, 528, 630
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	3 cut(s)	254, 296, 470
MspI	CCGG	2 cut(s)	170, 441
MspR9I	CCNGG	2 cut(s)	170, 227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	42, 184
NlaIII	CATG	2 cut(s)	250, 386
NmuCI	GTSAC	3 cut(s)	151, 196, 461
NspI	RCATGY	1 cut(s)	386
PaeI	GCATGC	1 cut(s)	386
PfeI	GAWTC	3 cut(s)	137, 306, 670
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	295, 606
PleI	GAGTC	3 cut(s)	12, 148, 259
PpsI	GAGTC	3 cut(s)	12, 148, 259
PshAI	GACNNNNGTC	1 cut(s)	194
PshBI	ATTAAT	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	2 cut(s)	104, 466
PspGI	CCWGG	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	443
PvuII	CAGCTG	3 cut(s)	254, 296, 470
SaqAI	TTAA	3 cut(s)	87, 528, 630
SatI	GCNGC	2 cut(s)	294, 605
Sau3AI	GATC	2 cut(s)	42, 184
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	3 cut(s)	13, 148, 259
ScrFI	CCNGG	2 cut(s)	170, 227
SduI	GDGCHC	1 cut(s)	714
SetI	ASST	8 cut(s)	61, 116, 180, 256, 298, 448, 472, 651
SfaNI	GCATC	2 cut(s)	247, 315
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	443
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	3 cut(s)	525, 529, 642
StyD4I	CCNGG	2 cut(s)	168, 225
TaaI	ACNGT	2 cut(s)	32, 583
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	525, 529, 642
TfiI	GAWTC	3 cut(s)	137, 306, 670
Tru1I	TTAA	3 cut(s)	87, 528, 630
Tru9I	TTAA	3 cut(s)	87, 528, 630
TscAI	CASTG	2 cut(s)	405, 700
TseFI	GTSAC	3 cut(s)	151, 196, 461
TseI	GCWGC	2 cut(s)	293, 604
Tsp45I	GTSAC	3 cut(s)	151, 196, 461
TspDTI	ATGAA	3 cut(s)	303, 447, 563
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	405, 700
VpaK11BI	GGWCC	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	528
XceI	RCATGY	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.