Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Reverse (-)

60450483 .. 60454287

Gene Structure 3805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTCGTGGTAGTGGTGGAGGGTACGACCGTCATATCACGATCTTCTCACCCGAAGGTCGTCTTTTCCAAGTCGAATATGCGTTTAAGGCTGTCAAGTCTGCTGGGATTACCTCCATTGGTGTCCGAGGGAAGGATTCAGTATGTGTTGTGACTCAGAAGAAAGTCCCGGACAAACTTTTGGATCAGACGAGTGTAACCCATCTTTTTCCCATTACTAAGTTCCTAGGGTTGCTGGCTACTGGCATGACAGCTGATGCAAGGACTCTGGTATCACAAGCAAGGAATGAAGCAGCTGACTTCCGATTCAAAAATGGATATGAGATGCCTGTAGATGTATTGGCTAACTGGATTGCAAACAAATCACAAGTCTATACTCAACATGCTTATATGAGACCACTGGGTGTAGTTGCTATGGTGTTGGGTGTTGATGAAGAGACCGGACCTCAACTCTATAAGTGTGACCCAGCTGGTCATTACTTTGGTCATAAGGCCACAAGTGCTGGATTGAAAGAACAAGAGGCAATTAATTTCTTAGAGAAGAAAATGAAGAATGACCCTTCCTTTACATACGAGGAGACTGTGCAGACTGCCATTTCTGCGCTGCAATCAGTTCTGCAAGAGGATTTTAAGGCCACGGAAATTGAGGTTGGAGTGGTGAGAAAGGAGAATCCCGTTTTTAGAGTGTTGCCCACTGAAGAGATTGATGAGCACTTGACTGCCATAAGTGAGAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

246

Amino Acids

27.24

Weight (kDa)

5.91

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	9 - 31	3.8e-15	Proteasome subunit A N-terminal signature
Proteasome	PF00227	35 - 220	8.8e-52	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	717
AdeI	CACNNNGTG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	310, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AluBI	AGCT	3 cut(s)	254, 296, 470
AluI	AGCT	3 cut(s)	254, 296, 470
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	3 cut(s)	388, 431, 572
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	2 cut(s)	492, 633
ApeKI	GCWGC	2 cut(s)	293, 604
ArsI	GACNNNNNNTTYG	2 cut(s)	354, 386
AseI	ATTAAT	1 cut(s)	528
AspA2I	CCTAGG	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	604
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	2 cut(s)	42, 670
AvaII	GGWCC	1 cut(s)	443
AvrII	CCTAGG	1 cut(s)	226
BaeI	ACNNNNGTAYC	4 cut(s)	16, 49, 255, 288
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	2 cut(s)	305, 591
BccI	CCATC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	388, 431, 572
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	2 cut(s)	294, 605
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	2 cut(s)	295, 606
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	2 cut(s)	247, 315
BmuI	ACTGGG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	170
BsaI	GGTCTC	2 cut(s)	388, 431
BsaJI	CCNNGG	3 cut(s)	127, 226, 636
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	3 cut(s)	247, 353, 405
BseDI	CCNNGG	3 cut(s)	127, 226, 636
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	3 cut(s)	247, 353, 405
BseRI	GAGGAG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	305, 591
BseYI	CCCAGC	2 cut(s)	104, 466
BsgI	GTGCAG	1 cut(s)	605
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	494, 635
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	170, 441
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	388, 431, 572
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	494, 635
Bso31I	GGTCTC	2 cut(s)	388, 431
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	2 cut(s)	42, 184
BspANI	GGCC	2 cut(s)	494, 635
BspCNI	CTCAG	1 cut(s)	169
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	2 cut(s)	388, 431
BsrI	ACTGG	3 cut(s)	247, 353, 405
BssECI	CCNNGG	3 cut(s)	127, 226, 636
BssMI	GATC	2 cut(s)	42, 184
BssT1I	CCWWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	32, 583
Bst6I	CTCTTC	2 cut(s)	429, 693
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	156, 219, 535
BstDSI	CCRYGG	1 cut(s)	636
BstHHI	GCGC	1 cut(s)	604
BstKTI	GATC	2 cut(s)	45, 187
BstMAI	GTCTC	3 cut(s)	388, 431, 572
BstMBI	GATC	2 cut(s)	42, 184
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	305, 591
BsuRI	GGCC	2 cut(s)	494, 635
BtgI	CCRYGG	1 cut(s)	636
BtsIMutI	CAGTG	2 cut(s)	398, 693
Cac8I	GCNNGC	1 cut(s)	237
CfoI	GCGC	1 cut(s)	604
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	1 cut(s)	25
CspCI	CAANNNNNGTGG	2 cut(s)	625, 660
CviAII	CATG	2 cut(s)	247, 383
CviJI	RGCY	8 cut(s)	92, 239, 254, 296, 344, 470, 494, 635
CviKI_1	RGCY	8 cut(s)	92, 239, 254, 296, 344, 470, 494, 635
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	3 cut(s)	156, 219, 535
DpnI	GATC	2 cut(s)	44, 186
DpnII	GATC	2 cut(s)	42, 184
DraIII	CACNNNGTG	1 cut(s)	404
Eam1104I	CTCTTC	2 cut(s)	429, 693
EarI	CTCTTC	2 cut(s)	429, 693
Eco130I	CCWWGG	1 cut(s)	226
Eco31I	GGTCTC	2 cut(s)	388, 431
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	717
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	2 cut(s)	250, 386
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	246, 382
Fnu4HI	GCNGC	2 cut(s)	294, 605
Fsp4HI	GCNGC	2 cut(s)	294, 605
FspBI	CTAG	1 cut(s)	227
GlaI	GCGC	1 cut(s)	603
GluI	GCNGC	2 cut(s)	294, 605
GsaI	CCCAGC	2 cut(s)	108, 470
HaeIII	GGCC	2 cut(s)	494, 635
HapII	CCGG	2 cut(s)	170, 441
HhaI	GCGC	1 cut(s)	604
Hin1II	CATG	2 cut(s)	250, 386
Hin6I	GCGC	1 cut(s)	602
HinP1I	GCGC	1 cut(s)	602
HinfI	GANTC	6 cut(s)	4, 137, 154, 265, 306, 670
HpaII	CCGG	2 cut(s)	170, 441
HphI	GGTGA	2 cut(s)	42, 670
Hpy188I	TCNGA	4 cut(s)	128, 159, 189, 305
Hpy188III	TCNNGA	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	50, 127, 570
HpyCH4III	ACNGT	2 cut(s)	32, 583
HpyCH4V	TGCA	5 cut(s)	260, 356, 586, 607, 619
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
HpyF3I	CTNAG	3 cut(s)	156, 219, 535
Hsp92II	CATG	2 cut(s)	250, 386
HspAI	GCGC	1 cut(s)	602
Kzo9I	GATC	2 cut(s)	42, 184
Lsp1109I	GCAGC	2 cut(s)	305, 591
LweI	GCATC	2 cut(s)	247, 315
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	3 cut(s)	151, 196, 461
MalI	GATC	2 cut(s)	44, 186
MboI	GATC	2 cut(s)	42, 184
MboII	GAAGA	6 cut(s)	37, 172, 446, 553, 562, 710
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	3 cut(s)	525, 529, 642
MlyI	GAGTC	3 cut(s)	13, 148, 259
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	8 cut(s)	14, 122, 124, 456, 514, 568, 616, 640
MseI	TTAA	3 cut(s)	87, 528, 630
MspA1I	CMGCKG	3 cut(s)	254, 296, 470
MspI	CCGG	2 cut(s)	170, 441
MspR9I	CCNGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	42, 184
NlaIII	CATG	2 cut(s)	250, 386
NmuCI	GTSAC	2 cut(s)	151, 461
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	3 cut(s)	137, 306, 670
PfoI	TCCNGGA	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	295, 606
PleI	GAGTC	3 cut(s)	12, 148, 259
PpsI	GAGTC	3 cut(s)	12, 148, 259
PshBI	ATTAAT	1 cut(s)	528
PspFI	CCCAGC	2 cut(s)	104, 466
PspPI	GGNCC	1 cut(s)	443
PvuII	CAGCTG	3 cut(s)	254, 296, 470
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	3 cut(s)	87, 528, 630
SatI	GCNGC	2 cut(s)	294, 605
Sau3AI	GATC	2 cut(s)	42, 184
Sau96I	GGNCC	1 cut(s)	443
SchI	GAGTC	3 cut(s)	13, 148, 259
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	1 cut(s)	714
SetI	ASST	7 cut(s)	61, 116, 256, 298, 448, 472, 651
SfaNI	GCATC	2 cut(s)	247, 315
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	1 cut(s)	443
Sse9I	AATT	3 cut(s)	525, 529, 642
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	2 cut(s)	32, 583
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	525, 529, 642
TfiI	GAWTC	3 cut(s)	137, 306, 670
Tru1I	TTAA	3 cut(s)	87, 528, 630
Tru9I	TTAA	3 cut(s)	87, 528, 630
TscAI	CASTG	2 cut(s)	405, 700
TseFI	GTSAC	2 cut(s)	151, 461
TseI	GCWGC	2 cut(s)	293, 604
Tsp45I	GTSAC	2 cut(s)	151, 461
TspDTI	ATGAA	3 cut(s)	303, 447, 563
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	2 cut(s)	405, 700
VpaK11BI	GGWCC	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	528
XceI	RCATGY	1 cut(s)	386
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.