Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010140

Physical Location & Seq

Genomic Coordinates Reverse (-)

13765076 .. 13767888

Gene Structure 2813 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G35590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTAGAGGAAGCGGCGCTGGTTATGATCGTCACATCACTATCTTCTCACCGGAAGGTCGTCTCTTTCAAGTTGAATATGCCTTCAAGGCCGTGAAAACAGCTGGTATTACTTCAATCGGAGTTCGTGGGAAAGATTCGGTTTGCGTCGTTACCCAGAAGAAAGTTCCTGACAAGCTTTTGGATCAGTCTAGTGTTACACATCTGTTCCCTATCACCAAGTACATTGGATTGGTAGCTACTGGCATTACAGCTGATGCAAGGTCTTTGGTTCAACAAGCAAGGAATCAAGCAGCTGAATTTCGGTTCACTTATGGATATGAGATGCCTGTTGACATTCTTGCTAAATGGATAGCGGACAAGTCACAGGTCTACACTCAACATGCTTACATGAGACCCCTTGGAGTTGTCGCTATGGTAATGGGTGTTGATGAAGAGAATGGTCCCTTACTTTACAAATGTGACCCAGCTGGACATTTTTACGGTCACAAGGCAACTAGTGCTGGTATGAAGGAACAAGAAGCAGTCAATTTCTTGGAGAAGAAAATGAAAGAAAACCCATCTTTCACATTTGATGAAACCGTGCAGACTGCCATATCGGCTTTGCAATCTGTTCTTCAAGAAGACTTCAAGGCTACTGAGATTGAGGTAGGTGTGGTGAGAGCAGAGAACCCGGAATTCCGTGCATTGACAACGGAGGAGATTGAGGAGCATTTGACAGCCATTAGTGAACGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0005840 GO:0005844 GO:0008150 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0019773 GO:0022626 GO:0031090 GO:0032991 GO:0042221 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

246

Amino Acids

27.29

Weight (kDa)

5.6

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	9 - 31	3.8e-15	Proteasome subunit A N-terminal signature
Proteasome	PF00227	36 - 220	5.3e-53	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05840 AT2G05840 AT2G05840 AT5G35590
fragaria_vesca	FvH4_6g35040
malus_domestica	MD09G1179900.v1.1 MD17G1165500.v1.1
prunus_persica	Prupe.3G038700_v2.0.a1
pyrus_communis	pycom09g09760 pycom17g15820
rosa_chinensis	RchiOBHm_Chr2g0146201 RchiOBHm_Chr3g0481901
rosa_multiflora	Rmu_sc0020926.1_g000001
rosa_roxburghii	Rroxscaffold_152G00434900 Rroxscaffold_2G00100250
rosa_rugosa	Rorug02G0393700
rosa_samantha	Rh1AG384600 Rh2AG449500 Rh2CG436400
rosa_wichuraiana	Rw1G033920 Rw2G036700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	2 cut(s)	15, 356
AclWI	GGATC	1 cut(s)	192
AcsI	RAATTY	2 cut(s)	299, 677
AfaI	GTAC	1 cut(s)	224
AgsI	TTSAA	7 cut(s)	71, 77, 88, 117, 275, 620, 631
AhlI	ACTAGT	1 cut(s)	497
AluBI	AGCT	6 cut(s)	104, 178, 239, 254, 296, 470
AluI	AGCT	6 cut(s)	104, 178, 239, 254, 296, 470
Alw26I	GTCTC	3 cut(s)	68, 388, 729
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	293
ApoI	RAATTY	2 cut(s)	299, 677
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	443
AsuC2I	CCSGG	1 cut(s)	674
AsuHPI	GGTGA	3 cut(s)	42, 208, 670
AvaII	GGWCC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	674
BcoDI	GTCTC	3 cut(s)	68, 388, 729
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	2 cut(s)	192, 498
BfoI	RGCGCY	1 cut(s)	21
BglI	GCCNNNNNGGC	2 cut(s)	89, 599
BisI	GCNGC	2 cut(s)	16, 294
BlsI	GCNGC	2 cut(s)	17, 295
Bme1390I	CCNGG	1 cut(s)	674
Bme18I	GGWCC	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	674
BmsI	GCATC	2 cut(s)	247, 315
BpiI	GAAGAC	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	400
BsaWI	WCCGGW	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	400
BseMII	CTCAG	1 cut(s)	630
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	713, 722
BseXI	GCAGC	1 cut(s)	305
BseYI	CCCAGC	1 cut(s)	466
BsgI	GTGCAG	1 cut(s)	605
BshFI	GGCC	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	53, 674
BslFI	GGGAC	1 cut(s)	429
BsmAI	GTCTC	3 cut(s)	68, 388, 729
BsmBI	CGTCTC	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	1 cut(s)	92
Bso31I	GGTCTC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	28, 184
BspACI	CCGC	2 cut(s)	15, 356
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	445
BspPI	GGATC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	2 cut(s)	28, 184
BssT1I	CCWWGG	1 cut(s)	400
Bst4CI	ACNGT	2 cut(s)	485, 583
Bst6I	CTCTTC	1 cut(s)	429
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstDEI	CTNAG	1 cut(s)	639
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	2 cut(s)	31, 187
BstMAI	GTCTC	3 cut(s)	68, 388, 729
BstMBI	GATC	2 cut(s)	28, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	672
BstV1I	GCAGC	1 cut(s)	305
BstV2I	GAAGAC	1 cut(s)	630
BsuRI	GGCC	1 cut(s)	92
CfoI	GCGC	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	443
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	2 cut(s)	383, 391
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	2 cut(s)	30, 186
DpnII	GATC	2 cut(s)	28, 184
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	400
Eco31I	GGTCTC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	677
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
Esp3I	CGTCTC	1 cut(s)	68
FaeI	CATG	2 cut(s)	386, 394
FaiI	YATR	9 cut(s)	27, 81, 315, 321, 384, 392, 416, 509, 596
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	2 cut(s)	382, 390
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	2 cut(s)	16, 294
Fsp4HI	GCNGC	2 cut(s)	16, 294
FspBI	CTAG	2 cut(s)	192, 498
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	2 cut(s)	16, 294
GsaI	CCCAGC	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	2 cut(s)	53, 674
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	386, 394
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	2 cut(s)	137, 286
HpaII	CCGG	2 cut(s)	53, 674
HphI	GGTGA	3 cut(s)	42, 208, 670
Hpy166II	GTNNAC	4 cut(s)	309, 334, 373, 731
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	2 cut(s)	170, 620
Hpy8I	GTNNAC	4 cut(s)	309, 334, 373, 731
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	3 cut(s)	50, 94, 505
HpyCH4III	ACNGT	2 cut(s)	485, 583
HpyCH4V	TGCA	4 cut(s)	260, 586, 607, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
HpyF3I	CTNAG	1 cut(s)	639
Hsp92II	CATG	2 cut(s)	386, 394
HspAI	GCGC	1 cut(s)	18
Kzo9I	GATC	2 cut(s)	28, 184
LmnI	GCTCC	1 cut(s)	709
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	2 cut(s)	247, 315
MaeI	CTAG	2 cut(s)	192, 498
MaeIII	GTNAC	6 cut(s)	32, 151, 196, 363, 461, 485
MalI	GATC	2 cut(s)	30, 186
MboI	GATC	2 cut(s)	28, 184
MboII	GAAGA	6 cut(s)	37, 172, 446, 553, 608, 635
MluCI	AATT	3 cut(s)	299, 529, 677
MnlI	CCTC	3 cut(s)	640, 691, 700
MspA1I	CMGCKG	4 cut(s)	104, 254, 296, 470
MspI	CCGG	2 cut(s)	53, 674
MspR9I	CCNGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	3 cut(s)	89, 500, 599
NciI	CCSGG	1 cut(s)	674
NdeII	GATC	2 cut(s)	28, 184
NlaIII	CATG	2 cut(s)	386, 394
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	4 cut(s)	32, 363, 461, 485
NspI	RCATGY	1 cut(s)	386
PfeI	GAWTC	2 cut(s)	137, 286
PkrI	GCNGC	2 cut(s)	17, 295
PspFI	CCCAGC	1 cut(s)	466
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	443
PvuII	CAGCTG	4 cut(s)	104, 254, 296, 470
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
SatI	GCNGC	2 cut(s)	16, 294
Sau3AI	GATC	2 cut(s)	28, 184
Sau96I	GGNCC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	674
SfaNI	GCATC	2 cut(s)	247, 315
SinI	GGWCC	1 cut(s)	443
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	3 cut(s)	299, 529, 677
SsiI	CCGC	2 cut(s)	15, 356
SspMI	CTAG	2 cut(s)	192, 498
StyD4I	CCNGG	1 cut(s)	672
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	2 cut(s)	485, 583
TasI	AATT	3 cut(s)	299, 529, 677
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	137, 286
TseFI	GTSAC	4 cut(s)	32, 363, 461, 485
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	4 cut(s)	32, 363, 461, 485
TspDTI	ATGAA	4 cut(s)	447, 524, 563, 591
TspGWI	ACGGA	2 cut(s)	671, 710
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	2 cut(s)	299, 677
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	372
XspI	CTAG	2 cut(s)	192, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.