RchiOBHm_Chr3g0481901

Proteasome subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010140
Physical Location & Seq
Forward (+)
28035643 .. 28039092
3450 bp
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UTR
Exon/CDS
Intron
PRQ44681

Sequence Viewer

Length: 282 bp
ATGGTGTTTCAGTGTTTCACCAATGCACATGATATATACTTACTGTATTGCTGGTTGGTTATTACACAGGGAGATAATGACCACTGGTATCATTTGTATGTACAGGCTAGGATTGGAAACAAATCACAAGTCTATACTCAACATGCTTATATGAGACCGCTGGGAGTAGTTGCTATGGTGTTGGGTGTTGATGAAGAGACCGGACCTCAACTCTATAAGTGTGAGCCAGCTGGTCATTACTTTGGTCATAAGGGAATTTCTGTCACTGCAATGGGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome Proteasome_A_N

Protein Analysis

93

Amino Acids

10.6

Weight (kDa)

6.25

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 35 - 92 5.1e-13 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 255
AfaI GTAC 1 cut(s) 102
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 2 cut(s) 148, 191
ApoI RAATTY 1 cut(s) 255
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 10
AvaII GGWCC 1 cut(s) 203
BcoDI GTCTC 2 cut(s) 148, 191
BfaI CTAG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BsaI GGTCTC 2 cut(s) 148, 191
BsaWI WCCGGW 1 cut(s) 200
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 160
BsiSI CCGG 1 cut(s) 201
BsmAI GTCTC 2 cut(s) 148, 191
Bso31I GGTCTC 2 cut(s) 148, 191
Bsp1407I TGTACA 1 cut(s) 100
BspACI CCGC 1 cut(s) 158
BspTNI GGTCTC 2 cut(s) 148, 191
BsrDI GCAATG 1 cut(s) 276
BsrGI TGTACA 1 cut(s) 100
BsrI ACTGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 189
BstAUI TGTACA 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 228
BstMAI GTCTC 2 cut(s) 148, 191
BstNSI RCATGY 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 3 cut(s) 17, 82, 264
Cac8I GCNNGC 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 101
CviAII CATG 2 cut(s) 29, 143
CviJI RGCY 3 cut(s) 107, 226, 230
CviKI_1 RGCY 3 cut(s) 107, 226, 230
CviQI GTAC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco31I GGTCTC 2 cut(s) 148, 191
Eco47I GGWCC 1 cut(s) 203
FaeI CATG 2 cut(s) 32, 146
FatI CATG 2 cut(s) 28, 142
FspBI CTAG 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 164
HapII CCGG 1 cut(s) 201
Hin1II CATG 2 cut(s) 32, 146
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 26, 269
Hsp92II CATG 2 cut(s) 32, 146
LpnPI CCDG 8 cut(s) 37, 53, 70, 89, 146, 214, 216, 240
MaeI CTAG 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 262
MboII GAAGA 1 cut(s) 206
MluCI AATT 1 cut(s) 255
MnlI CCTC 1 cut(s) 216
MslI CAYNNNNRTG 2 cut(s) 96, 269
MspA1I CMGCKG 2 cut(s) 160, 230
MspI CCGG 1 cut(s) 201
NlaIII CATG 2 cut(s) 32, 146
NmuCI GTSAC 1 cut(s) 262
NspI RCATGY 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 160
PspPI GGNCC 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 230
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 2 cut(s) 96, 269
Sau96I GGNCC 1 cut(s) 203
SetI ASST 2 cut(s) 208, 232
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 96, 269
Sse9I AATT 1 cut(s) 255
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 45
TasI AATT 1 cut(s) 255
TatI WGTACW 1 cut(s) 100
TscAI CASTG 3 cut(s) 17, 89, 271
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 3 cut(s) 17, 89, 271
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 255
XceI RCATGY 1 cut(s) 146
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.