Rw1G033920

Proteasome subunit alpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0010140
Physical Location & Seq
Forward (+)
61864688 .. 61866526
1839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033920.1

Sequence Viewer

Length: 789 bp
ATGGCTGCATTCAAGTCGGTAGCTCTTCTTGCTTTGGTTGTTGTTGCTATGTCAATGTCGGGTATTAAGGTATCCGAGGGCCGAGTTGCAAGGAAGGATTTGGGTATTGATCTTGGAGGAATTGGGATTGGAGCAGGAGTGGGACTAGGTTTAGGGCTAGGTGGAGGTCGAGGTGGCTCTGGGTCAGGGTCTGGATCCGGATCCGAATCCGGATCCGGCTCAGGTTCCGGCGGTTCTAGTTCTGCGTCAAGTTCAGCTTCATCAAGTTCAAGTTATACTTCTGGGTCTGGTGGTGGAGGTAGCAGTGCAGGCTCCGAGGCAGGTTCATCTGCCGGATCTCGGGCCGGGTCGGGGTCTTCAGGGAAAAATACACAGGGTGGTGGACGTGGTTCGGGCTCGGGTTCTGGAGGGGGCGGGGGTTCGGGGAGGGGAAGTGGCTCTGGTAATGGTGAGGGTTATGGTGAGGGGCGTGGATACGAAGAAAGTCCCGGACAAACTTTTGGATCAGACGAGTGTAACCCATCTTGCATGACAGCTGATGCAAGGACTCTGGTATCACAAGCAAGGAATGAAGCAGCTGACTTCCGATTCAAAAATGGATATGAGACATTGGCTAACTGGATTGCAAACAAATCACAAGTCTATACTCAACATGCTTATATGAGACCACTAGGAGTAGTCGCTATGGTGTTGGGTGTTGATGAAGAGACCGAACCTCAACTCTATAAGTGTGACCCAGCTGGTCATTACTTTGGTAAGTGCTGGATTGAAAGAACAAGAGGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome Proteasome_A_N

Protein Analysis

262

Amino Acids

25.38

Weight (kDa)

6.74

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 177 - 252 5.7e-19 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 311
AccIII TCCGGA 2 cut(s) 197, 209
AciI CCGC 2 cut(s) 231, 414
AclWI GGATC 8 cut(s) 189, 195, 202, 207, 208, 220, 343, 511
AcuI CTGAAG 1 cut(s) 342
AdeI CACNNNGTG 1 cut(s) 377
AfiI CCNNNNNNNGG 2 cut(s) 339, 351
AgsI TTSAA 4 cut(s) 13, 270, 592, 770
AjiI CACGTC 1 cut(s) 386
AluBI AGCT 5 cut(s) 23, 257, 536, 578, 740
AluI AGCT 5 cut(s) 23, 257, 536, 578, 740
Alw26I GTCTC 3 cut(s) 599, 658, 701
AlwI GGATC 8 cut(s) 189, 195, 202, 207, 208, 220, 343, 511
AlwNI CAGNNNCTG 1 cut(s) 191
Ama87I CYCGRG 2 cut(s) 339, 397
Aor13HI TCCGGA 2 cut(s) 197, 209
AoxI GGCC 2 cut(s) 79, 342
ApeKI GCWGC 2 cut(s) 5, 575
ArsI GACNNNNNNTTYG 2 cut(s) 624, 656
AspS9I GGNCC 2 cut(s) 79, 342
AsuC2I CCSGG 2 cut(s) 346, 489
AsuHPI GGTGA 2 cut(s) 461, 473
AvaI CYCGRG 2 cut(s) 339, 397
BaeI ACNNNNGTAYC 2 cut(s) 537, 570
BamHI GGATCC 3 cut(s) 194, 200, 212
BanII GRGCYC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 587
BccI CCATC 1 cut(s) 529
BcgI CGANNNNNNTGC 1 cut(s) 31
BciVI GTATCC 2 cut(s) 82, 467
BcnI CCSGG 2 cut(s) 346, 489
BcoDI GTCTC 3 cut(s) 599, 658, 701
BfaI CTAG 4 cut(s) 146, 158, 237, 671
BfuAI ACCTGC 1 cut(s) 311
BfuI GTATCC 2 cut(s) 82, 467
BisI GCNGC 2 cut(s) 6, 576
BlsI GCNGC 2 cut(s) 7, 577
Bme1390I CCNGG 2 cut(s) 346, 489
BmeT110I CYCGRG 2 cut(s) 339, 397
BmgBI CACGTC 1 cut(s) 386
BmgT120I GGNCC 2 cut(s) 79, 342
BmiI GGNNCC 5 cut(s) 196, 202, 214, 226, 313
BmrFI CCNGG 2 cut(s) 346, 489
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 426
Bpu10I CCTNAGC 1 cut(s) 220
BpuMI CCSGG 2 cut(s) 346, 489
BsaBI GATNNNNATC 2 cut(s) 199, 205
BsaI GGTCTC 2 cut(s) 658, 701
BsaJI CCNNGG 2 cut(s) 75, 315
BsaWI WCCGGW 2 cut(s) 197, 209
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 418, 448
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 351
Bse1I ACTGG 1 cut(s) 623
Bse8I GATNNNNATC 2 cut(s) 199, 205
BseAI TCCGGA 2 cut(s) 197, 209
BseDI CCNNGG 2 cut(s) 75, 315
BseJI GATNNNNATC 2 cut(s) 199, 205
BseLI CCNNNNNNNGG 2 cut(s) 339, 351
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 623
BseXI GCAGC 1 cut(s) 587
BseYI CCCAGC 1 cut(s) 736
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 2 cut(s) 81, 344
BsiHKCI CYCGRG 2 cut(s) 339, 397
BsiSI CCGG 7 cut(s) 198, 210, 216, 228, 333, 345, 489
BslFI GGGAC 2 cut(s) 156, 471
BslI CCNNNNNNNGG 2 cut(s) 339, 351
BsmAI GTCTC 3 cut(s) 599, 658, 701
BsmFI GGGAC 2 cut(s) 156, 471
BsmI GAATGC 1 cut(s) 8
BsnI GGCC 2 cut(s) 81, 344
Bso31I GGTCTC 2 cut(s) 658, 701
BsoBI CYCGRG 2 cut(s) 339, 397
Bsp1286I GDGCHC 1 cut(s) 398
Bsp13I TCCGGA 2 cut(s) 197, 209
Bsp143I GATC 6 cut(s) 109, 194, 200, 212, 335, 503
BspACI CCGC 2 cut(s) 231, 414
BspANI GGCC 2 cut(s) 81, 344
BspCNI CTCAG 1 cut(s) 233
BspEI TCCGGA 2 cut(s) 197, 209
BspLI GGNNCC 5 cut(s) 196, 202, 214, 226, 313
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 8 cut(s) 189, 195, 202, 207, 208, 220, 343, 511
BspQI GCTCTTC 1 cut(s) 30
BspTNI GGTCTC 2 cut(s) 658, 701
BsrI ACTGG 1 cut(s) 623
BssECI CCNNGG 2 cut(s) 75, 315
BssMI GATC 6 cut(s) 109, 194, 200, 212, 335, 503
Bst6I CTCTTC 2 cut(s) 30, 699
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 220
BstKTI GATC 6 cut(s) 112, 197, 203, 215, 338, 506
BstMAI GTCTC 3 cut(s) 599, 658, 701
BstMBI GATC 6 cut(s) 109, 194, 200, 212, 335, 503
BstMWI GCNNNNNNNGC 2 cut(s) 29, 309
BstNSI RCATGY 1 cut(s) 656
BstSCI CCNGG 2 cut(s) 344, 487
BstV1I GCAGC 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 4 cut(s) 194, 200, 212, 335
BstYI RGATCY 4 cut(s) 194, 200, 212, 335
BsuI GTATCC 2 cut(s) 82, 467
BsuRI GGCC 2 cut(s) 81, 344
BtrI CACGTC 1 cut(s) 386
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 310
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 310
CaiI CAGNNNCTG 1 cut(s) 191
Cfr13I GGNCC 2 cut(s) 79, 342
CseI GACGC 1 cut(s) 234
CviAII CATG 2 cut(s) 529, 653
DdeI CTNAG 1 cut(s) 220
DpnI GATC 6 cut(s) 111, 196, 202, 214, 337, 505
DpnII GATC 6 cut(s) 109, 194, 200, 212, 335, 503
DraIII CACNNNGTG 1 cut(s) 377
Eam1104I CTCTTC 2 cut(s) 30, 699
EarI CTCTTC 2 cut(s) 30, 699
Eco24I GRGCYC 1 cut(s) 398
Eco31I GGTCTC 2 cut(s) 658, 701
Eco57I CTGAAG 1 cut(s) 342
Eco88I CYCGRG 2 cut(s) 339, 397
EcoT38I GRGCYC 1 cut(s) 398
FaeI CATG 2 cut(s) 532, 656
FalI AAGNNNNNCTT 4 cut(s) 241, 273, 262, 294
FaqI GGGAC 2 cut(s) 156, 471
FatI CATG 2 cut(s) 528, 652
FauI CCCGC 1 cut(s) 407
Fnu4HI GCNGC 2 cut(s) 6, 576
FriOI GRGCYC 1 cut(s) 398
Fsp4HI GCNGC 2 cut(s) 6, 576
FspBI CTAG 4 cut(s) 146, 158, 237, 671
GluI GCNGC 2 cut(s) 6, 576
GsaI CCCAGC 1 cut(s) 740
GsuI CTGGAG 1 cut(s) 426
HaeIII GGCC 2 cut(s) 81, 344
HapII CCGG 7 cut(s) 198, 210, 216, 228, 333, 345, 489
HgaI GACGC 1 cut(s) 234
Hin1II CATG 2 cut(s) 532, 656
HinfI GANTC 3 cut(s) 206, 547, 588
HpaII CCGG 7 cut(s) 198, 210, 216, 228, 333, 345, 489
HphI GGTGA 2 cut(s) 461, 473
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 5 cut(s) 76, 205, 316, 508, 587
Hpy188III TCNNGA 4 cut(s) 192, 198, 210, 405
Hpy8I GTNNAC 1 cut(s) 383
HpyAV CCTTC 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 6 cut(s) 8, 89, 308, 528, 542, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 309
HpyF3I CTNAG 1 cut(s) 220
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 2 cut(s) 532, 656
Kpn2I TCCGGA 2 cut(s) 197, 209
Kzo9I GATC 6 cut(s) 109, 194, 200, 212, 335, 503
LguI GCTCTTC 1 cut(s) 30
LmnI GCTCC 2 cut(s) 131, 317
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 1 cut(s) 529
MaeI CTAG 4 cut(s) 146, 158, 237, 671
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 2 cut(s) 515, 731
MalI GATC 6 cut(s) 111, 196, 202, 214, 337, 505
MboI GATC 6 cut(s) 109, 194, 200, 212, 335, 503
MboII GAAGA 4 cut(s) 17, 348, 491, 716
MflI RGATCY 4 cut(s) 194, 200, 212, 335
MhlI GDGCHC 1 cut(s) 398
MluCI AATT 2 cut(s) 120, 784
MlyI GAGTC 1 cut(s) 541
MroI TCCGGA 2 cut(s) 197, 209
MseI TTAA 2 cut(s) 66, 787
MspA1I CMGCKG 3 cut(s) 536, 578, 740
MspI CCGG 7 cut(s) 198, 210, 216, 228, 333, 345, 489
MspR9I CCNGG 2 cut(s) 346, 489
Mva1269I GAATGC 1 cut(s) 8
MwoI GCNNNNNNNGC 2 cut(s) 29, 309
NciI CCSGG 2 cut(s) 346, 489
NdeII GATC 6 cut(s) 109, 194, 200, 212, 335, 503
NlaIII CATG 2 cut(s) 532, 656
NlaIV GGNNCC 5 cut(s) 196, 202, 214, 226, 313
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 731
NspI RCATGY 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 30
PctI GAATGC 1 cut(s) 8
PfeI GAWTC 2 cut(s) 206, 588
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 2 cut(s) 7, 577
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
PspFI CCCAGC 1 cut(s) 736
PspN4I GGNNCC 5 cut(s) 196, 202, 214, 226, 313
PspPI GGNCC 2 cut(s) 79, 342
PstNI CAGNNNCTG 1 cut(s) 191
PsuI RGATCY 4 cut(s) 194, 200, 212, 335
PvuII CAGCTG 3 cut(s) 536, 578, 740
SapI GCTCTTC 1 cut(s) 30
SaqAI TTAA 2 cut(s) 66, 787
SatI GCNGC 2 cut(s) 6, 576
Sau3AI GATC 6 cut(s) 109, 194, 200, 212, 335, 503
Sau96I GGNCC 2 cut(s) 79, 342
SchI GAGTC 1 cut(s) 541
ScrFI CCNGG 2 cut(s) 346, 489
SduI GDGCHC 1 cut(s) 398
SfaNI GCATC 1 cut(s) 529
Sse9I AATT 2 cut(s) 120, 784
SsiI CCGC 2 cut(s) 231, 414
SspMI CTAG 4 cut(s) 146, 158, 237, 671
StyD4I CCNGG 2 cut(s) 344, 487
TaiI ACGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 169
TaqII GACCGA 1 cut(s) 725
TasI AATT 2 cut(s) 120, 784
TfiI GAWTC 2 cut(s) 206, 588
Tru1I TTAA 2 cut(s) 66, 787
Tru9I TTAA 2 cut(s) 66, 787
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 2 cut(s) 5, 575
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 4 cut(s) 249, 315, 585, 717
TspRI CASTG 1 cut(s) 310
XceI RCATGY 1 cut(s) 656
XspI CTAG 4 cut(s) 146, 158, 237, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.