Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

7498101 .. 7499331

Gene Structure 1231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGTCGCTTTGCTCTGCGAGGTTCCTTCCTTCTCCATCGCTCGATATTTTATCTACGAAGACGAAGATATCCTCCGACTCGCGCTCGCTTGGTTGCTCTTCGTCGCGTGTCTTTGCTTTCTCTTCCGTTCACCGTTCTTCTTCGCGTCGCAATCGGAATCAGCTGCAAGTTGTGTCTATGGCTCCTGAGGAAGAAAAGCTCACTCGTCGTAATCCTCTCGATTTCCCAATTGAGTGGGAAAGACCTAAACCTGGGAGGAGGCCTGACATTTTCCCCAAGTTTAGCCCTATGAAGACACCATTGCCACCACCGATGCCTTATGATCCTCCGGAAGAGGATGAAGAAGAGGAAGAGAAGAAAGAAGAGGAAGAAGAAAACCCAGACCAAGAAGAAGAGGAACAACCCGAGAAGCAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.19

Weight (kDa)

4.87

Isoelectric Point (pI)

118.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	85, 109, 148
AccIII	TCCGGA	1 cut(s)	331
AclWI	GGATC	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	166, 202
AluI	AGCT	2 cut(s)	166, 202
AlwI	GGATC	1 cut(s)	320
Ama87I	CYCGRG	1 cut(s)	407
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	166, 415
AspLEI	GCGC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	407
AxyI	CCTNAGG	1 cut(s)	189
BbsI	GAAGAC	2 cut(s)	68, 302
BbvI	GCAGC	1 cut(s)	153
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	255
BisI	GCNGC	2 cut(s)	167, 416
BlsI	GCNGC	2 cut(s)	168, 417
Bme1390I	CCNGG	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	26, 186
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	68, 302
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse21I	CCTNAGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	302
BseAI	TCCGGA	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	153
Bsh1236I	CGCG	3 cut(s)	85, 109, 148
BshFI	GGCC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	254
BsnI	GGCC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	407
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	181
BspEI	TCCGGA	1 cut(s)	331
BspFNI	CGCG	3 cut(s)	85, 109, 148
BspLI	GGNNCC	2 cut(s)	26, 186
BspPI	GGATC	1 cut(s)	320
BspQI	GCTCTTC	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	1 cut(s)	325
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	137
Bst6I	CTCTTC	7 cut(s)	106, 130, 330, 342, 348, 360, 390
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	3 cut(s)	85, 109, 148
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstUI	CGCG	3 cut(s)	85, 109, 148
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	2 cut(s)	68, 302
BstXI	CCANNNNNNTGG	1 cut(s)	237
Bsu36I	CCTNAGG	1 cut(s)	189
BsuRI	GGCC	1 cut(s)	265
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	346
Cac8I	GCNNGC	1 cut(s)	89
CfoI	GCGC	1 cut(s)	87
CseI	GACGC	1 cut(s)	137
CviJI	RGCY	5 cut(s)	166, 185, 202, 265, 288
CviKI_1	RGCY	5 cut(s)	166, 185, 202, 265, 288
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eam1104I	CTCTTC	7 cut(s)	106, 130, 330, 342, 348, 360, 390
EarI	CTCTTC	7 cut(s)	106, 130, 330, 342, 348, 360, 390
Eco147I	AGGCCT	1 cut(s)	265
Eco32I	GATATC	1 cut(s)	72
Eco81I	CCTNAGG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	72
FaiI	YATR	3 cut(s)	182, 293, 324
Fnu4HI	GCNGC	2 cut(s)	167, 416
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	167, 416
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	167, 416
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	332
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	80, 160
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	2 cut(s)	79, 159
Hpy188III	TCNNGA	3 cut(s)	188, 221, 332
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	4 cut(s)	10, 109, 153, 213
HpyAV	CCTTC	2 cut(s)	38, 42
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	85
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	325
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	6 cut(s)	201, 240, 267, 279, 345, 396
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	1 cut(s)	306
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	102
MroI	TCCGGA	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	255
MvnI	CGCG	3 cut(s)	85, 109, 148
NdeII	GATC	1 cut(s)	325
NlaIV	GGNNCC	2 cut(s)	26, 186
PceI	AGGCCT	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	2 cut(s)	168, 417
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	26, 186
PvuII	CAGCTG	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	106
SatI	GCNGC	2 cut(s)	167, 416
Sau3AI	GATC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	5 cut(s)	26, 168, 204, 250, 256
SfaNI	GCATC	1 cut(s)	306
Sse9I	AATT	1 cut(s)	231
SseBI	AGGCCT	1 cut(s)	265
StuI	AGGCCT	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	2 cut(s)	45, 222
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	160
TseI	GCWGC	2 cut(s)	166, 415
TspDTI	ATGAA	2 cut(s)	308, 357
TspGWI	ACGGA	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.