Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

3797508 .. 3798010

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG053300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGATGGCGTCTCATAGCCTCTCATCGCTGAGTGTATCGCCCACTTGGAGTTGGAGAAGGCAATCTCCTTTAGCTTCACCTACTACTTCTGTATCTTCATCCGCATCTTTCGCTTCTCGCCGGCGCCGGAGCCACGTGGTTTGTATGGCCCCAGATGAAGAGAAGCTCACTCGCCGCAACCCTCTGGATTTCCCAATTGAGTGGGAGAGGCCTAAGCCGGGGCGGAGACCTGACATATTCCCACAGTTTAGTCCTATGAAGACACCATTACCTCCTCCGATGCCGTATGACCCGCCGGAGGAAGATGAGGAGGAGGAGGAGAAGAAAGAGGAGGAAGAAGAGCAAGAGCAAGAAGAGGACTCTCCGGAAAAGATTGACCCAGATAAGAATAATTCTGTCTTTGGATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.72

Weight (kDa)

4.75

Isoelectric Point (pI)

122.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	4 cut(s)	102, 175, 223, 293
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	2 cut(s)	8, 124
AfiI	CCNNNNNNNGG	2 cut(s)	218, 298
AluBI	AGCT	2 cut(s)	74, 166
AluI	AGCT	2 cut(s)	74, 166
Alw26I	GTCTC	2 cut(s)	15, 220
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	2 cut(s)	147, 209
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	69
BaeI	ACNNNNGTAYC	2 cut(s)	75, 108
BanI	GGYRCC	1 cut(s)	123
BbrPI	CACGTG	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	15, 220
BfoI	RGCGCY	1 cut(s)	127
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	3 cut(s)	125, 131, 150
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	113, 270
BpiI	GAAGAC	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	136
BsaHI	GRCGYC	2 cut(s)	8, 124
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 298
Bse118I	RCCGGY	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	218, 298
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	6 cut(s)	264, 323, 326, 329, 332, 344
BshFI	GGCC	2 cut(s)	149, 211
BshNI	GGYRCC	1 cut(s)	123
BsiSI	CCGG	5 cut(s)	121, 127, 218, 296, 365
BslI	CCNNNNNNNGG	2 cut(s)	218, 298
BsmAI	GTCTC	2 cut(s)	15, 220
BsmBI	CGTCTC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	149, 211
Bso31I	GGTCTC	1 cut(s)	220
Bsp13I	TCCGGA	1 cut(s)	364
BspACI	CCGC	4 cut(s)	102, 175, 223, 293
BspANI	GGCC	2 cut(s)	149, 211
BspCNI	CTCAG	1 cut(s)	21
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	125, 131, 150
BspQI	GCTCTTC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	218
BssNI	GRCGYC	2 cut(s)	8, 124
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	3 cut(s)	153, 333, 348
BstACI	GRCGYC	2 cut(s)	8, 124
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	2 cut(s)	29, 213
BstF5I	GGATG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstMAI	GTCTC	2 cut(s)	15, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	149, 211
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	122
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviJI	RGCY	7 cut(s)	18, 74, 132, 149, 166, 211, 217
CviKI_1	RGCY	7 cut(s)	18, 74, 132, 149, 166, 211, 217
DdeI	CTNAG	2 cut(s)	29, 213
DinI	GGCGCC	1 cut(s)	125
Eam1104I	CTCTTC	3 cut(s)	153, 333, 348
EarI	CTCTTC	3 cut(s)	153, 333, 348
EciI	GGCGGA	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	220
Eco72I	CACGTG	1 cut(s)	136
EgeI	GGCGCC	1 cut(s)	125
EheI	GGCGCC	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	15
FaiI	YATR	5 cut(s)	15, 146, 236, 257, 288
FauI	CCCGC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	175
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	175
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	149, 211
HapII	CCGG	5 cut(s)	121, 127, 218, 296, 365
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	2 cut(s)	8, 124
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	2 cut(s)	359, 405
HpaII	CCGG	5 cut(s)	121, 127, 218, 296, 365
HphI	GGTGA	1 cut(s)	69
Hpy188I	TCNGA	2 cut(s)	279, 410
Hpy188III	TCNNGA	2 cut(s)	185, 365
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	2 cut(s)	29, 213
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	2 cut(s)	8, 124
HspAI	GCGC	1 cut(s)	124
KasI	GGCGCC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	364
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	129
LpnPI	CCDG	9 cut(s)	134, 140, 165, 170, 231, 243, 309, 378, 393
LweI	GCATC	2 cut(s)	113, 270
MaeII	ACGT	1 cut(s)	135
MboII	GAAGA	8 cut(s)	87, 170, 271, 314, 334, 347, 350, 365
MfeI	CAATTG	1 cut(s)	195
MluCI	AATT	2 cut(s)	195, 391
Mly113I	GGCGCC	1 cut(s)	124
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	32
MreI	CGCCGGCG	1 cut(s)	120
MroI	TCCGGA	1 cut(s)	364
MroNI	GCCGGC	1 cut(s)	120
MspI	CCGG	5 cut(s)	121, 127, 218, 296, 365
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	110
NaeI	GCCGGC	1 cut(s)	122
NarI	GGCGCC	1 cut(s)	124
NciI	CCSGG	1 cut(s)	219
NgoMIV	GCCGGC	1 cut(s)	120
NlaIV	GGNNCC	3 cut(s)	125, 131, 150
PceI	AGGCCT	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	333
PdiI	GCCGGC	1 cut(s)	122
PfeI	GAWTC	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	353
PluTI	GGCGCC	1 cut(s)	127
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	136
PspCI	CACGTG	1 cut(s)	136
PspN4I	GGNNCC	3 cut(s)	125, 131, 150
PspPI	GGNCC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	333
SatI	GCNGC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	6 cut(s)	76, 82, 138, 168, 232, 274
SfaNI	GCATC	2 cut(s)	113, 270
SfoI	GGCGCC	1 cut(s)	125
SgrAI	CRCCGGYG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	195, 391
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	4 cut(s)	102, 175, 223, 293
SspDI	GGCGCC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	1 cut(s)	138
TasI	AATT	2 cut(s)	195, 391
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	405
TspDTI	ATGAA	3 cut(s)	87, 171, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.