Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Reverse (-)

8927864 .. 8929376

Gene Structure 1513 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G24506.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACGCCGCTTTCTATATCGGCATCGCCTTCGCCGCCGTGGCCACTTCTCTCTCCGCCACTATCTTCATCGTCGTTAAACAGAGCTGCTCCGTCTATTTTTTCCCCTTTCTCTCGAATCAACCATGGCTTCTCGTGCTCTTTCATCGCCGTTCAACGCTTCGCTCTAAGCCGCAAGACAAGGAAGCAGTTACAGGTGGTGGCTATGGCTCCTGAGGAAGAGAAGCTCACTCGTCGCAATCCTCTCGATTTCCCTATCGAATGGGAGAGACCAAAGCCAGGGAGGAGACCAGATATATTCCCAAAGTTTAGTCCTATGAAGTCACCGTTGCCTCCTCCTATGCCTTATGATCCTCCAGAAGAAGAGGAAGAAGAGGAAGAGAAGAAAGAAGAAGAAACTGAAGATGACCCTGAAAAGGAAGACGAGGACCAACCCGATAACCGGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

17.06

Weight (kDa)

4.83

Isoelectric Point (pI)

106.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	8, 35, 56, 172
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	278, 415, 441
AgeI	ACCGGT	1 cut(s)	441
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	2 cut(s)	86, 226
AluI	AGCT	2 cut(s)	86, 226
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	2 cut(s)	262, 280
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	86
AsiGI	ACCGGT	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	43
BauI	CACGAG	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	73
BceAI	ACGGC	2 cut(s)	22, 134
BcgI	CGANNNNNNTGC	4 cut(s)	12, 46, 226, 260
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	262, 280
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	4 cut(s)	8, 35, 87, 172
BlsI	GCNGC	4 cut(s)	9, 36, 88, 173
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	262, 280
BsaJI	CCNNGG	3 cut(s)	38, 124, 278
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 415, 441
Bse118I	RCCGGY	1 cut(s)	441
Bse21I	CCTNAGG	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	3 cut(s)	38, 124, 278
BseLI	CCNNNNNNNGG	3 cut(s)	278, 415, 441
BseMII	CTCAG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	298, 324
BseXI	GCAGC	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	446
BshFI	GGCC	1 cut(s)	43
BshTI	ACCGGT	1 cut(s)	441
BsiEI	CGRYCG	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	442
BslI	CCNNNNNNNGG	3 cut(s)	278, 415, 441
BsmAI	GTCTC	2 cut(s)	262, 280
BsnI	GGCC	1 cut(s)	43
Bso31I	GGTCTC	2 cut(s)	262, 280
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	4 cut(s)	8, 35, 56, 172
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	344
BspTNI	GGTCTC	2 cut(s)	262, 280
BsrFI	RCCGGY	1 cut(s)	441
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	3 cut(s)	38, 124, 278
BssMI	GATC	1 cut(s)	349
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	124
Bst2BI	CACGAG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	327
Bst6I	CTCTTC	4 cut(s)	213, 357, 366, 372
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	167, 213
BstDSI	CCRYGG	2 cut(s)	38, 124
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	2 cut(s)	262, 280
BstMBI	GATC	1 cut(s)	349
BstMCI	CGRYCG	1 cut(s)	446
BstMWI	GCNNNNNNNGC	3 cut(s)	34, 40, 135
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	43
BtgI	CCRYGG	2 cut(s)	38, 124
BtgZI	GCGATG	2 cut(s)	9, 130
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	1 cut(s)	13
CspAI	ACCGGT	1 cut(s)	441
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	8 cut(s)	43, 86, 129, 171, 203, 209, 226, 277
CviKI_1	RGCY	8 cut(s)	43, 86, 129, 171, 203, 209, 226, 277
DdeI	CTNAG	2 cut(s)	167, 213
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	4 cut(s)	213, 357, 366, 372
EarI	CTCTTC	4 cut(s)	213, 357, 366, 372
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	124
Eco31I	GGTCTC	2 cut(s)	262, 280
Eco47I	GGWCC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	420
Eco81I	CCTNAGG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	1 cut(s)	128
FaiI	YATR	7 cut(s)	17, 126, 206, 296, 317, 341, 348
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	8, 35, 87, 172
Fsp4HI	GCNGC	4 cut(s)	8, 35, 87, 172
GluI	GCNGC	4 cut(s)	8, 35, 87, 172
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	442
HgaI	GACGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	1 cut(s)	315
Hpy188III	TCNNGA	4 cut(s)	114, 212, 245, 356
Hpy99I	CGWCG	2 cut(s)	76, 237
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	1 cut(s)	327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	34, 40, 135
HpyF3I	CTNAG	2 cut(s)	167, 213
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	94, 214
LpnPI	CCDG	7 cut(s)	179, 225, 264, 291, 303, 369, 423
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	189, 321
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	140
MlsI	TGGCCA	1 cut(s)	43
MluNI	TGGCCA	1 cut(s)	43
MnlI	CCTC	9 cut(s)	208, 252, 276, 342, 345, 358, 363, 367, 418
Mox20I	TGGCCA	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	43
MseI	TTAA	1 cut(s)	77
Msp20I	TGGCCA	1 cut(s)	43
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	34, 40, 135
NcoI	CCATGG	1 cut(s)	124
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	117
PinAI	ACCGGT	1 cut(s)	441
PkrI	GCNGC	4 cut(s)	9, 36, 88, 173
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	4 cut(s)	8, 35, 87, 172
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	3 cut(s)	88, 198, 228
SfaNI	GCATC	1 cut(s)	32
SinI	GGWCC	1 cut(s)	427
SsiI	CCGC	4 cut(s)	8, 35, 56, 172
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	115, 246, 258
TauI	GCSGC	3 cut(s)	10, 37, 174
TfiI	GAWTC	1 cut(s)	117
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	3 cut(s)	57, 133, 332
TspGWI	ACGGA	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.