Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

3761613 .. 3762633

Gene Structure 1021 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1047200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTATGGCGTCGAGCTGCCTCTCAACGCTGAGCTGCGTGTCCCCTAGCTGCAGTTGGTCGAATTGGAGACGAAAGCAATCTTCTTTATCCCCAGCAAGGTCGTCGTCTCCTTCCTCCGCCCTGTGGTTCGATTCTCGCCGGCGTCGGAGGAGTCAGGTGGTGCGTATGGCACCGGATGAGGAGAAGCTCACCCGCCGCAACCCTCTCGATTTCCCGATTGAGTGGGAGAGGCCAAAGCCGGGGCGGAGGCCTGACATTTTCCCGCAGTTCAGTCCTATGAAGACGCCTCTGCCGCCTCCTATGCCGTATGACCCGCCGGAAGAAGACGAAGACGAGGAGGAGAAGAAGGAGGAGGAGGAAGAGGAGCAAGAGCAGGAGGAGGAATCTCCGGAGAAGATTGACCCAGATAAGAACAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.48

Weight (kDa)

4.79

Isoelectric Point (pI)

147.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	7 cut(s)	120, 196, 199, 247, 266, 296, 317
AcyI	GRCGYC	3 cut(s)	11, 145, 287
AfiI	CCNNNNNNNGG	3 cut(s)	99, 126, 242
AluBI	AGCT	4 cut(s)	18, 36, 51, 190
AluI	AGCT	4 cut(s)	18, 36, 51, 190
Alw26I	GTCTC	2 cut(s)	64, 114
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	2 cut(s)	233, 251
ApeKI	GCWGC	3 cut(s)	18, 36, 51
AsuC2I	CCSGG	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	172
BbsI	GAAGAC	3 cut(s)	290, 333, 339
BbvI	GCAGC	3 cut(s)	5, 23, 38
BceAI	ACGGC	1 cut(s)	292
BcgI	CGANNNNNNTGC	4 cut(s)	87, 121, 190, 224
BcnI	CCSGG	1 cut(s)	243
BcoDI	GTCTC	2 cut(s)	64, 114
BfaI	CTAG	1 cut(s)	48
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	5 cut(s)	19, 37, 52, 199, 296
BlpI	GCTNAGC	1 cut(s)	32
BlsI	GCNGC	5 cut(s)	20, 38, 53, 200, 297
Bme1390I	CCNGG	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	243
BpiI	GAAGAC	3 cut(s)	290, 333, 339
Bpu1102I	GCTNAGC	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	243
BsaHI	GRCGYC	3 cut(s)	11, 145, 287
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	2 cut(s)	175, 391
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 126, 242
Bse118I	RCCGGY	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	391
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	3 cut(s)	99, 126, 242
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	8 cut(s)	166, 197, 353, 356, 368, 371, 380, 395
BseXI	GCAGC	3 cut(s)	5, 23, 38
BseYI	CCCAGC	1 cut(s)	94
BshFI	GGCC	2 cut(s)	235, 253
BshNI	GGYRCC	1 cut(s)	172
BsiSI	CCGG	5 cut(s)	142, 176, 242, 320, 392
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	3 cut(s)	99, 126, 242
BsmAI	GTCTC	2 cut(s)	64, 114
BsmBI	CGTCTC	2 cut(s)	64, 114
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	235, 253
Bsp13I	TCCGGA	1 cut(s)	391
Bsp1720I	GCTNAGC	1 cut(s)	32
BspACI	CCGC	7 cut(s)	120, 196, 199, 247, 266, 296, 317
BspANI	GGCC	2 cut(s)	235, 253
BspCNI	CTCAG	1 cut(s)	24
BspEI	TCCGGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	242
BssNI	GRCGYC	3 cut(s)	11, 145, 287
Bst6I	CTCTTC	1 cut(s)	357
BstACI	GRCGYC	3 cut(s)	11, 145, 287
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	64, 114
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 304
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	5, 23, 38
BstV2I	GAAGAC	3 cut(s)	290, 333, 339
BsuRI	GGCC	2 cut(s)	235, 253
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	141
CseI	GACGC	2 cut(s)	134, 295
CviJI	RGCY	8 cut(s)	5, 18, 36, 51, 190, 235, 241, 253
CviKI_1	RGCY	8 cut(s)	5, 18, 36, 51, 190, 235, 241, 253
DdeI	CTNAG	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
EciI	GGCGGA	2 cut(s)	109, 262
Eco147I	AGGCCT	1 cut(s)	253
Esp3I	CGTCTC	2 cut(s)	64, 114
FaiI	YATR	5 cut(s)	8, 170, 281, 305, 312
FaqI	GGGAC	1 cut(s)	28
FauI	CCCGC	3 cut(s)	203, 273, 324
Fnu4HI	GCNGC	5 cut(s)	19, 37, 52, 199, 296
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	5 cut(s)	19, 37, 52, 199, 296
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	5 cut(s)	19, 37, 52, 199, 296
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	235, 253
HapII	CCGG	5 cut(s)	142, 176, 242, 320, 392
HgaI	GACGC	2 cut(s)	134, 295
Hin1I	GRCGYC	3 cut(s)	11, 145, 287
HinfI	GANTC	3 cut(s)	134, 154, 386
HpaII	CCGG	5 cut(s)	142, 176, 242, 320, 392
HphI	GGTGA	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	209, 217, 392
Hpy99I	CGWCG	3 cut(s)	16, 109, 150
HpyAV	CCTTC	2 cut(s)	123, 343
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 304
HpyF3I	CTNAG	1 cut(s)	32
Hsp92I	GRCGYC	3 cut(s)	11, 145, 287
Kpn2I	TCCGGA	1 cut(s)	391
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	3 cut(s)	5, 23, 38
MaeI	CTAG	1 cut(s)	48
MboII	GAAGA	8 cut(s)	75, 295, 335, 338, 344, 358, 374, 409
MluCI	AATT	1 cut(s)	64
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	128
MreI	CGCCGGCG	1 cut(s)	141
MroI	TCCGGA	1 cut(s)	391
MroNI	GCCGGC	1 cut(s)	141
MseI	TTAA	1 cut(s)	424
MspI	CCGG	5 cut(s)	142, 176, 242, 320, 392
MspR9I	CCNGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	295, 304
NaeI	GCCGGC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	243
NgoMIV	GCCGGC	1 cut(s)	141
NlaIV	GGNNCC	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	134, 386
PkrI	GCNGC	5 cut(s)	20, 38, 53, 200, 297
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	5 cut(s)	19, 37, 52, 199, 296
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	6 cut(s)	20, 38, 53, 104, 162, 192
SfcI	CTRYAG	1 cut(s)	52
SgrAI	CRCCGGYG	1 cut(s)	141
Sse9I	AATT	1 cut(s)	64
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	7 cut(s)	120, 196, 199, 247, 266, 296, 317
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	241
TaqI	TCGA	4 cut(s)	14, 62, 132, 210
TasI	AATT	1 cut(s)	64
TauI	GCSGC	2 cut(s)	201, 298
TfiI	GAWTC	2 cut(s)	134, 386
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TseI	GCWGC	3 cut(s)	18, 36, 51
TspDTI	ATGAA	1 cut(s)	296
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.