Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

3909395 .. 3910198

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG054000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGATGGCGTCTCATAGCCTCTCATCGCTGAGTGTATCGCCCACTTGGAGTTGGAGAAGGCAATCTCCTTTAGCTTCACCTACTACTTCTGTGTCTTCATCCGCATCTTTCGCTTCTCGCCGGCTCCGGAGCCACGTGGTTTGTATGGCCCCAGATGAAGAGAAGCTCACTCGCCGCAACCCTCTGGATTTCCCGATTGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

68

Amino Acids

7.49

Weight (kDa)

11.25

Isoelectric Point (pI)

97.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	2 cut(s)	102, 175
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	1 cut(s)	202
AluBI	AGCT	2 cut(s)	74, 166
AluI	AGCT	2 cut(s)	74, 166
Alw26I	GTCTC	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	126
AoxI	GGCC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	69
BbrPI	CACGTG	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	3 cut(s)	125, 131, 150
BmsI	GCATC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	126
BseGI	GGATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	121, 127
BsmAI	GTCTC	1 cut(s)	15
BsmBI	CGTCTC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	149
Bsp13I	TCCGGA	1 cut(s)	126
BspACI	CCGC	2 cut(s)	102, 175
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	21
BspEI	TCCGGA	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	125, 131, 150
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssNI	GRCGYC	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	201
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	6 cut(s)	18, 74, 124, 132, 149, 166
CviKI_1	RGCY	6 cut(s)	18, 74, 124, 132, 149, 166
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco72I	CACGTG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	207
FaiI	YATR	3 cut(s)	15, 146, 205
FatI	CATG	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	121, 127
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	207
HpaII	CCGG	2 cut(s)	121, 127
HphI	GGTGA	1 cut(s)	69
Hpy188III	TCNNGA	3 cut(s)	127, 185, 193
HpyAV	CCTTC	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	126
KroI	GCCGGC	1 cut(s)	120
KroNI	GCCGGC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	129, 129
LpnPI	CCDG	4 cut(s)	134, 140, 165, 170
LweI	GCATC	1 cut(s)	113
MaeII	ACGT	1 cut(s)	135
MboII	GAAGA	2 cut(s)	87, 170
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	2 cut(s)	29, 192
MroI	TCCGGA	1 cut(s)	126
MroNI	GCCGGC	1 cut(s)	120
MspI	CCGG	2 cut(s)	121, 127
MwoI	GCNNNNNNNGC	1 cut(s)	110
NaeI	GCCGGC	1 cut(s)	122
NgoMIV	GCCGGC	1 cut(s)	120
NlaIII	CATG	1 cut(s)	207
NlaIV	GGNNCC	3 cut(s)	125, 131, 150
PdiI	GCCGGC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	176
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	136
PspCI	CACGTG	1 cut(s)	136
PspN4I	GGNNCC	3 cut(s)	125, 131, 150
PspPI	GGNCC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SatI	GCNGC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	148
SetI	ASST	4 cut(s)	76, 82, 138, 168
SfaNI	GCATC	1 cut(s)	113
SgeI	CNNG	9 cut(s)	57, 129, 133, 139, 146, 148, 164, 183, 197
SsiI	CCGC	2 cut(s)	102, 175
TaiI	ACGT	1 cut(s)	138
TauI	GCSGC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	87, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.