Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

20708533 .. 20710300

Gene Structure 1768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1211800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGTTGCGGAGCCTCACGCTGCCTCTGCCCGCCGTAATCCCGCCATTACCAACACCTTCTTCTTCTTCTCCTCCTTCTCCATATCCTTCTTTCTGGTGTAGTTTCAGACAGAACCAGTATAAACGTTATCCCGTTTGCTCTATCACTCTCCGCCCAAAACCCCTAACCTTTCTCAATCGTCAGACGCAAAGCCCTGTCGTTCGGATGGCTCCCGAGGAGGAAAAGCTGACCCGTCGCTCCCCTCTCGATTTCCCCATTGAATGGGAACGGCCGAAACCTGCTAGGAGACCAGATATATTTCCCCAGTTTAGCCCAATGAAAACACCTTTACCGCCTCCACTGCCAGCAGATCCTCCTGAAGAAGACGAAGAAGAGGAAGAAAAGAAAGAGGAGGAAGAAGGGGATGAAGATGCAGACAAGGAAACCCCAGAAGACCCAGGGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

17.22

Weight (kDa)

4.73

Isoelectric Point (pI)

113.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AccB7I	CCANNNNNTGG	1 cut(s)	264
AciI	CCGC	5 cut(s)	10, 33, 44, 154, 335
AclI	AACGTT	1 cut(s)	127
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	439
AjuI	GAANNNNNNNTTGG	2 cut(s)	46, 78
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	347
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	22, 445
AvaI	CYCGRG	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	372, 441
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	2 cut(s)	20, 287
BciT130I	CCWGG	1 cut(s)	441
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	2 cut(s)	23, 446
BlsI	GCNGC	2 cut(s)	24, 447
Bme1390I	CCNGG	1 cut(s)	441
BmeT110I	CYCGRG	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	14, 213
BmrFI	CCNGG	1 cut(s)	441
BmrI	ACTGGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	301
BpiI	GAAGAC	2 cut(s)	372, 441
BsaI	GGTCTC	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	216, 439, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
Bse1I	ACTGG	2 cut(s)	118, 307
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	3 cut(s)	216, 439, 440
BseGI	GGATG	2 cut(s)	213, 412
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseNI	ACTGG	2 cut(s)	118, 307
BseRI	GAGGAG	3 cut(s)	63, 233, 407
BseX3I	CGGCCG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	9
Bsh1285I	CGRYCG	1 cut(s)	275
BshFI	GGCC	1 cut(s)	274
BsiEI	CGRYCG	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	264
BsmAI	GTCTC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	274
Bso31I	GGTCTC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	5 cut(s)	10, 33, 44, 154, 335
BspANI	GGCC	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	14, 213
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	118, 307
BssECI	CCNNGG	3 cut(s)	216, 439, 440
BssMI	GATC	1 cut(s)	352
Bst2UI	CCWGG	1 cut(s)	441
Bst6I	CTCTTC	1 cut(s)	369
BstC8I	GCNNGC	2 cut(s)	33, 348
BstF5I	GGATG	2 cut(s)	213, 412
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	352
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 343
BstNI	CCWGG	1 cut(s)	441
BstSCI	CCNGG	1 cut(s)	439
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	2 cut(s)	372, 441
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BstZI	CGGCCG	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	213, 412
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	33, 348
CseI	GACGC	1 cut(s)	196
CviJI	RGCY	6 cut(s)	15, 195, 212, 229, 274, 315
CviKI_1	RGCY	6 cut(s)	15, 195, 212, 229, 274, 315
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	272
EagI	CGGCCG	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EciI	GGCGGA	1 cut(s)	143
EclXI	CGGCCG	1 cut(s)	272
Eco31I	GGTCTC	1 cut(s)	283
Eco52I	CGGCCG	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	439
FaiI	YATR	3 cut(s)	85, 123, 299
FauI	CCCGC	2 cut(s)	40, 51
Fnu4HI	GCNGC	2 cut(s)	23, 446
FokI	GGATG	2 cut(s)	220, 419
Fsp4HI	GCNGC	2 cut(s)	23, 446
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	2 cut(s)	23, 446
HaeIII	GGCC	1 cut(s)	274
HgaI	GACGC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	110, 186, 207
Hpy188III	TCNNGA	3 cut(s)	215, 248, 359
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	4 cut(s)	69, 87, 99, 395
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 343
HpySE526I	ACGT	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	3 cut(s)	12, 217, 245
Lsp1109I	GCAGC	1 cut(s)	9
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	127
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MflI	RGATCY	1 cut(s)	352
MspR9I	CCNGG	1 cut(s)	441
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	28, 343
NdeII	GATC	1 cut(s)	352
NlaIV	GGNNCC	2 cut(s)	14, 213
PasI	CCCWGGG	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	24, 447
Psp1406I	AACGTT	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	2 cut(s)	14, 213
PsuI	RGATCY	1 cut(s)	352
SatI	GCNGC	2 cut(s)	23, 446
Sau3AI	GATC	1 cut(s)	352
ScrFI	CCNGG	1 cut(s)	441
SetI	ASST	6 cut(s)	61, 130, 173, 231, 283, 331
SfaNI	GCATC	1 cut(s)	403
SsiI	CCGC	5 cut(s)	10, 33, 44, 154, 335
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	1 cut(s)	439
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	2 cut(s)	22, 445
TspDTI	ATGAA	2 cut(s)	335, 423
TspRI	CASTG	1 cut(s)	348
Van91I	CCANNNNNTGG	1 cut(s)	264
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.