Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

2628377 .. 2629796

Gene Structure 1420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g03940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAAAGGCTAACAAGAAGAATGTGGAGCCAAAGGCGACTGAGTATCTCTTTATATCCATCCAAGGCCCTTCCAAAGCAACAACAGAATCTGAGGTGGGATAAGAAGCAACAATGTGATCAAGATTACAATTGTGGGATTGCTGCAGGGAATAACAAGCAAAAGGAAGCGAAAAAATGGGCAATGTCCGACGCTGAGGCTAGTGATGAGGAAGCGCCTTGGAGCCTGCTGCAACTTGGAAAGTCAGAAGTCCAATCGCAAAGACCGGACGAAGAAGCAGCGGTTGAAAGCAGAAGAGAAGTGATTGCTATGGCTATGGCGTCGAGCTGCCTCTCAGCGCTGATCTGCGTAACTCCTAGTTGCAGCTGGTCGAATTGGAGACGAAAGCAATCTTCTTTATCCCCAGCAAGGTCGTCGTCTCCTTCCTCCGCCCTGTGGTTCGATTCTCGACACCATCGGAGGAGTCAGGTGGTGCGTATGGCACCGGATGAGGAGAAGCTCACCCGCCGCAACCCTCTCGATTTCCCGATTGAGTGGGAGAGGCCAAAGCCGGGGCGGAGGCCTGACATTTTCCCGCAGTTCAGTCCTATGAAGACGCCTCTGCCGCCTCCTATGCCGTATGACCCGCCGGAAGAAGACGAAGACGAGGAGGAGAAGAAGGAGGAGGAGGAAGAGGAGCAAGAGCAGGAGGAGGAATCTCCGGAGAAGATTGACCCAGATAAGAACAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

28.38

Weight (kDa)

5.15

Isoelectric Point (pI)

109.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AccIII	TCCGGA	1 cut(s)	700
AciI	CCGC	8 cut(s)	281, 429, 505, 508, 556, 575, 605, 626
AcyI	GRCGYC	2 cut(s)	320, 596
AfeI	AGCGCT	1 cut(s)	339
AfiI	CCNNNNNNNGG	3 cut(s)	408, 435, 551
AgsI	TTSAA	1 cut(s)	287
AluBI	AGCT	3 cut(s)	327, 366, 499
AluI	AGCT	3 cut(s)	327, 366, 499
Alw26I	GTCTC	2 cut(s)	373, 423
AlwNI	CAGNNNCTG	1 cut(s)	91
Aor13HI	TCCGGA	1 cut(s)	700
Aor51HI	AGCGCT	1 cut(s)	339
AoxI	GGCC	3 cut(s)	66, 542, 560
ApeKI	GCWGC	5 cut(s)	143, 229, 278, 327, 363
AspLEI	GCGC	2 cut(s)	217, 340
AspS9I	GGNCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	481
BbsI	GAAGAC	3 cut(s)	599, 642, 648
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	5 cut(s)	130, 216, 290, 314, 375
BccI	CCATC	2 cut(s)	67, 462
BceAI	ACGGC	1 cut(s)	601
BcgI	CGANNNNNNTGC	4 cut(s)	396, 430, 499, 533
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	2 cut(s)	373, 423
BfaI	CTAG	2 cut(s)	201, 357
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	2 cut(s)	218, 341
BisI	GCNGC	7 cut(s)	144, 230, 279, 328, 364, 508, 605
BlsI	GCNGC	7 cut(s)	145, 231, 280, 329, 365, 509, 606
Bme1390I	CCNGG	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	29, 224, 483
BmrFI	CCNGG	1 cut(s)	552
BpiI	GAAGAC	3 cut(s)	599, 642, 648
Bpu10I	CCTNAGC	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	552
BsaHI	GRCGYC	2 cut(s)	320, 596
BsaJI	CCNNGG	3 cut(s)	63, 218, 551
BsaWI	WCCGGW	3 cut(s)	265, 484, 700
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 435, 551
Bse3DI	GCAATG	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	700
BseDI	CCNNGG	3 cut(s)	63, 218, 551
BseGI	GGATG	2 cut(s)	59, 493
BseLI	CCNNNNNNNGG	3 cut(s)	408, 435, 551
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	4 cut(s)	32, 83, 186, 348
BseRI	GAGGAG	8 cut(s)	475, 506, 662, 665, 677, 680, 689, 704
BseXI	GCAGC	5 cut(s)	130, 216, 290, 314, 375
BseYI	CCCAGC	1 cut(s)	403
BshFI	GGCC	3 cut(s)	68, 544, 562
BshNI	GGYRCC	1 cut(s)	481
BsiSI	CCGG	5 cut(s)	266, 485, 551, 629, 701
BslI	CCNNNNNNNGG	3 cut(s)	408, 435, 551
BsmAI	GTCTC	2 cut(s)	373, 423
BsmBI	CGTCTC	2 cut(s)	373, 423
BsnI	GGCC	3 cut(s)	68, 544, 562
Bsp13I	TCCGGA	1 cut(s)	700
Bsp143I	GATC	2 cut(s)	118, 342
BspACI	CCGC	8 cut(s)	281, 429, 505, 508, 556, 575, 605, 626
BspANI	GGCC	3 cut(s)	68, 544, 562
BspCNI	CTCAG	4 cut(s)	33, 84, 187, 347
BspEI	TCCGGA	1 cut(s)	700
BspLI	GGNNCC	3 cut(s)	29, 224, 483
BspMAI	CTGCAG	1 cut(s)	148
BspT107I	GGYRCC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	189
BssECI	CCNNGG	3 cut(s)	63, 218, 551
BssMI	GATC	2 cut(s)	118, 342
BssNI	GRCGYC	2 cut(s)	320, 596
BssT1I	CCWWGG	2 cut(s)	63, 218
Bst6I	CTCTTC	2 cut(s)	289, 666
BstACI	GRCGYC	2 cut(s)	320, 596
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	4 cut(s)	41, 92, 195, 334
BstF5I	GGATG	2 cut(s)	59, 493
BstH2I	RGCGCY	2 cut(s)	218, 341
BstHHI	GCGC	2 cut(s)	217, 340
BstKTI	GATC	2 cut(s)	121, 345
BstMAI	GTCTC	2 cut(s)	373, 423
BstMBI	GATC	2 cut(s)	118, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	604, 613
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	5 cut(s)	130, 216, 290, 314, 375
BstV2I	GAAGAC	3 cut(s)	599, 642, 648
BsuRI	GGCC	3 cut(s)	68, 544, 562
BtsCI	GGATG	2 cut(s)	59, 493
Cac8I	GCNNGC	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	91
CfoI	GCGC	2 cut(s)	217, 340
Cfr13I	GGNCC	1 cut(s)	67
CseI	GACGC	3 cut(s)	200, 309, 604
DdeI	CTNAG	4 cut(s)	41, 92, 195, 334
DpnI	GATC	2 cut(s)	120, 344
DpnII	GATC	2 cut(s)	118, 342
Eam1104I	CTCTTC	2 cut(s)	289, 666
EarI	CTCTTC	2 cut(s)	289, 666
EciI	GGCGGA	2 cut(s)	418, 571
Eco130I	CCWWGG	2 cut(s)	63, 218
Eco147I	AGGCCT	1 cut(s)	562
Eco47III	AGCGCT	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	63, 218
ErhI	CCWWGG	2 cut(s)	63, 218
Esp3I	CGTCTC	2 cut(s)	373, 423
FaiI	YATR	7 cut(s)	55, 311, 317, 479, 590, 614, 621
FauI	CCCGC	3 cut(s)	512, 582, 633
FbaI	TGATCA	1 cut(s)	118
Fnu4HI	GCNGC	7 cut(s)	144, 230, 279, 328, 364, 508, 605
FokI	GGATG	2 cut(s)	46, 500
Fsp4HI	GCNGC	7 cut(s)	144, 230, 279, 328, 364, 508, 605
FspBI	CTAG	2 cut(s)	201, 357
GlaI	GCGC	2 cut(s)	216, 339
GluI	GCNGC	7 cut(s)	144, 230, 279, 328, 364, 508, 605
GsaI	CCCAGC	1 cut(s)	407
HaeII	RGCGCY	2 cut(s)	218, 341
HaeIII	GGCC	3 cut(s)	68, 544, 562
HapII	CCGG	5 cut(s)	266, 485, 551, 629, 701
HgaI	GACGC	3 cut(s)	200, 309, 604
HhaI	GCGC	2 cut(s)	217, 340
Hin1I	GRCGYC	2 cut(s)	320, 596
Hin6I	GCGC	2 cut(s)	215, 338
HinP1I	GCGC	2 cut(s)	215, 338
HinfI	GANTC	4 cut(s)	88, 443, 463, 695
HpaII	CCGG	5 cut(s)	266, 485, 551, 629, 701
HphI	GGTGA	1 cut(s)	493
Hpy188I	TCNGA	4 cut(s)	93, 190, 247, 459
Hpy188III	TCNNGA	5 cut(s)	122, 447, 518, 526, 701
Hpy99I	CGWCG	3 cut(s)	194, 325, 418
HpyAV	CCTTC	3 cut(s)	80, 432, 652
HpyCH4V	TGCA	3 cut(s)	146, 232, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	604, 613
HpyF3I	CTNAG	4 cut(s)	41, 92, 195, 334
Hsp92I	GRCGYC	2 cut(s)	320, 596
HspAI	GCGC	2 cut(s)	215, 338
Kpn2I	TCCGGA	1 cut(s)	700
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	118, 342
LmnI	GCTCC	3 cut(s)	27, 222, 676
Lsp1109I	GCAGC	5 cut(s)	130, 216, 290, 314, 375
MaeI	CTAG	2 cut(s)	201, 357
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	120, 344
MboI	GATC	2 cut(s)	118, 342
MfeI	CAATTG	1 cut(s)	130
MluCI	AATT	2 cut(s)	130, 373
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	213
MroI	TCCGGA	1 cut(s)	700
MseI	TTAA	1 cut(s)	733
MspA1I	CMGCKG	2 cut(s)	281, 366
MspI	CCGG	5 cut(s)	266, 485, 551, 629, 701
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	604, 613
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	2 cut(s)	118, 342
NlaIV	GGNNCC	3 cut(s)	29, 224, 483
PceI	AGGCCT	1 cut(s)	562
PfeI	GAWTC	3 cut(s)	88, 443, 695
PkrI	GCNGC	7 cut(s)	145, 231, 280, 329, 365, 509, 606
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
PspFI	CCCAGC	1 cut(s)	403
PspN4I	GGNNCC	3 cut(s)	29, 224, 483
PspPI	GGNCC	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	366
SaqAI	TTAA	1 cut(s)	733
SatI	GCNGC	7 cut(s)	144, 230, 279, 328, 364, 508, 605
Sau3AI	GATC	2 cut(s)	118, 342
Sau96I	GGNCC	1 cut(s)	67
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	1 cut(s)	552
SetI	ASST	6 cut(s)	98, 329, 368, 413, 471, 501
SfcI	CTRYAG	1 cut(s)	144
Sse9I	AATT	2 cut(s)	130, 373
SseBI	AGGCCT	1 cut(s)	562
SsiI	CCGC	8 cut(s)	281, 429, 505, 508, 556, 575, 605, 626
SspI	AATATT	1 cut(s)	730
SspMI	CTAG	2 cut(s)	201, 357
StuI	AGGCCT	1 cut(s)	562
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	2 cut(s)	63, 218
TaqI	TCGA	5 cut(s)	323, 371, 441, 448, 519
TasI	AATT	2 cut(s)	130, 373
TauI	GCSGC	2 cut(s)	510, 607
TfiI	GAWTC	3 cut(s)	88, 443, 695
Tru1I	TTAA	1 cut(s)	733
Tru9I	TTAA	1 cut(s)	733
TseI	GCWGC	5 cut(s)	143, 229, 278, 327, 363
TspDTI	ATGAA	1 cut(s)	605
XspI	CTAG	2 cut(s)	201, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.