Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Reverse (-)

53395012 .. 53399237

Gene Structure 4226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G032420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGTTGCGGAGCCTGACGGTGCCTCTGCCCGCCGTAATTCCACCAATCTCCTCTTCTTCTTCTCCTCGCCGGTATAGTCTTACACAAAACAACCACTACAATTCCCCTTGCTATGTAACTCTCCGCCGCACCCCTATCGTTCACAGCCTTCGGATGCGACGGCATGTCGTTCGGATGGCTCCCGAGGAGGAAAGGTTGACCCGTCGCTCCCCTCTGGATTTCCCCATCGAATGGGAAAGACCAAAACCTGGGAGGAGACCAGATATATTTCCCCAGTTTAGCCCTATGAAAACACCTTTACCAACTCCAATGCCGGCAGATCCTCCCGAAGAAGATGAAGAAGAGGAAGAAAAGAAAGAGGATGACGAAGAAGGAGAAGACAATCCTGACAAGGAGAACCCAGGAATCCCAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.23

Weight (kDa)

5.11

Isoelectric Point (pI)

106.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccB7I	CCANNNNNTGG	2 cut(s)	234, 251
AciI	CCGC	4 cut(s)	10, 33, 127, 130
AclWI	GGATC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	234, 251
AhdI	GACNNNNNGTC	1 cut(s)	167
AjnI	CCWGG	2 cut(s)	250, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
Alw26I	GTCTC	1 cut(s)	253
AlwI	GGATC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	185
BanI	GGYRCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	387
BccI	CCATC	2 cut(s)	172, 236
BceAI	ACGGC	2 cut(s)	20, 179
BcgI	CGANNNNNNTGC	4 cut(s)	121, 155, 155, 189
BciT130I	CCWGG	2 cut(s)	252, 405
BcoDI	GTCTC	1 cut(s)	253
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	2 cut(s)	252, 405
BmeRI	GACNNNNNGTC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	14, 24, 183
BmrFI	CCNGG	2 cut(s)	252, 405
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	271
BpiI	GAAGAC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	186, 251, 403
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 251
Bse118I	RCCGGY	2 cut(s)	72, 316
Bse1I	ACTGG	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	252, 405
BseDI	CCNNGG	3 cut(s)	186, 251, 403
BseGI	GGATG	3 cut(s)	162, 183, 370
BseLI	CCNNNNNNNGG	2 cut(s)	234, 251
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	4 cut(s)	43, 57, 203, 271
BshNI	GGYRCC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	73, 317
BslI	CCNNNNNNNGG	2 cut(s)	234, 251
BsmAI	GTCTC	1 cut(s)	253
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	4 cut(s)	10, 33, 127, 130
BspLI	GGNNCC	3 cut(s)	14, 24, 183
BspPI	GGATC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	253
BsrFI	RCCGGY	2 cut(s)	72, 316
BsrI	ACTGG	1 cut(s)	277
BssAI	RCCGGY	2 cut(s)	72, 316
BssECI	CCNNGG	3 cut(s)	186, 251, 403
BssMI	GATC	1 cut(s)	322
Bst2UI	CCWGG	2 cut(s)	252, 405
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	3 cut(s)	61, 339, 411
BstC8I	GCNNGC	2 cut(s)	33, 318
BstF5I	GGATG	3 cut(s)	162, 183, 370
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	322
BstNI	CCWGG	2 cut(s)	252, 405
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	2 cut(s)	250, 403
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtsCI	GGATG	3 cut(s)	162, 183, 370
Cac8I	GCNNGC	2 cut(s)	33, 318
Cfr10I	RCCGGY	2 cut(s)	72, 316
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	4 cut(s)	15, 150, 182, 285
CviKI_1	RGCY	4 cut(s)	15, 150, 182, 285
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DriI	GACNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	3 cut(s)	61, 339, 411
Eam1105I	GACNNNNNGTC	1 cut(s)	167
EarI	CTCTTC	3 cut(s)	61, 339, 411
EciI	GGCGGA	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	250, 403
FaeI	CATG	1 cut(s)	170
FaiI	YATR	5 cut(s)	78, 117, 168, 269, 290
FatI	CATG	1 cut(s)	166
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	3 cut(s)	169, 190, 377
Fsp4HI	GCNGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	130
HapII	CCGG	2 cut(s)	73, 317
Hin1II	CATG	1 cut(s)	170
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	1 cut(s)	408
HpaII	CCGG	2 cut(s)	73, 317
Hpy166II	GTNNAC	2 cut(s)	145, 201
Hpy188I	TCNGA	2 cut(s)	156, 177
Hpy188III	TCNNGA	4 cut(s)	185, 218, 329, 389
Hpy8I	GTNNAC	2 cut(s)	145, 201
Hpy99I	CGWCG	2 cut(s)	165, 210
HpyAV	CCTTC	2 cut(s)	161, 368
HpyCH4III	ACNGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	170
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	12, 187, 215
LweI	GCATC	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	2 cut(s)	39, 103
MroNI	GCCGGC	1 cut(s)	316
MspI	CCGG	2 cut(s)	73, 317
MspR9I	CCNGG	2 cut(s)	252, 405
MvaI	CCWGG	2 cut(s)	252, 405
NaeI	GCCGGC	1 cut(s)	318
NdeII	GATC	1 cut(s)	322
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	3 cut(s)	14, 24, 183
NspI	RCATGY	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	408
PflMI	CCANNNNNTGG	2 cut(s)	234, 251
PkrI	GCNGC	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	250, 403
PspGI	CCWGG	2 cut(s)	250, 403
PspN4I	GGNNCC	3 cut(s)	14, 24, 183
PsuI	RGATCY	1 cut(s)	322
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	252, 405
SetI	ASST	3 cut(s)	200, 253, 301
SfaNI	GCATC	1 cut(s)	147
Sse9I	AATT	2 cut(s)	39, 103
SsiI	CCGC	4 cut(s)	10, 33, 127, 130
StyD4I	CCNGG	2 cut(s)	250, 403
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	39, 103
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	305, 354
Van91I	CCANNNNNTGG	2 cut(s)	234, 251
XceI	RCATGY	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.