Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

11424567 .. 11425500

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g12900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGATTTGGTGGAATAGATTCCGAGAGGATCTCTTCCCGGCGCGGACTTGTCGAAGTTACTTCGGGTCATTCAGTCTCAGTAAGAAACTCAGCAATCCAAACTCCCGACCCAAATATGGCGTTGCGGAGCCTCACGCTGCCTCTGCCCGCCGTAATCCCGCCATTACCAACACCTTCTTCTTCTTCTCCTCCTTCTCCATATCCTTCTTTCTGGTGTAGTTTCAGACAGAACCAGTATAAACGTTATCCCGGTTGCTCTACCACTCTCCGCCCAAAACCCCTAACCTTTCTCCATCGTCAGACGCAAAGCCATGTCGTTCGGATGGCTCCCGAGGAGGAAAAGCTGACCCGCCGCTCCCCTCTCGAATTCCCCATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.16

Weight (kDa)

10.26

Isoelectric Point (pI)

83.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	357
AccII	CGCG	1 cut(s)	45
AciI	CCGC	7 cut(s)	45, 127, 150, 161, 271, 352, 355
AclI	AACGTT	1 cut(s)	244
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	45
AsuC2I	CCSGG	2 cut(s)	40, 252
AvaI	CYCGRG	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	126
BccI	CCATC	2 cut(s)	303, 319
BceAI	ACGGC	1 cut(s)	137
BcnI	CCSGG	2 cut(s)	40, 252
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	2 cut(s)	140, 355
BlsI	GCNGC	2 cut(s)	141, 356
Bme1390I	CCNGG	2 cut(s)	40, 252
BmeT110I	CYCGRG	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	131, 330
BmrFI	CCNGG	2 cut(s)	40, 252
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuMI	CCSGG	2 cut(s)	40, 252
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	2 cut(s)	93, 105
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	2 cut(s)	180, 350
BseXI	GCAGC	1 cut(s)	126
Bsh1236I	CGCG	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	40, 252
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	82
BsoBI	CYCGRG	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	7 cut(s)	45, 127, 150, 161, 271, 352, 355
BspCNI	CTCAG	2 cut(s)	92, 104
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	131, 330
BspPI	GGATC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	235
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	79, 91
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	45
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	38, 250
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	1 cut(s)	45
CseI	GACGC	1 cut(s)	313
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	4 cut(s)	132, 312, 329, 346
CviKI_1	RGCY	4 cut(s)	132, 312, 329, 346
DdeI	CTNAG	2 cut(s)	79, 91
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	368
FaeI	CATG	1 cut(s)	317
FaiI	YATR	4 cut(s)	119, 202, 240, 315
FatI	CATG	1 cut(s)	313
FauI	CCCGC	3 cut(s)	157, 168, 359
Fnu4HI	GCNGC	2 cut(s)	140, 355
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	2 cut(s)	140, 355
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	2 cut(s)	140, 355
HapII	CCGG	2 cut(s)	40, 252
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	40, 252
Hpy188I	TCNGA	4 cut(s)	25, 227, 303, 324
Hpy188III	TCNNGA	3 cut(s)	107, 332, 365
HpyAV	CCTTC	3 cut(s)	186, 204, 216
HpyCH4IV	ACGT	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	79, 91
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	3 cut(s)	129, 334, 362
LpnPI	CCDG	4 cut(s)	53, 199, 248, 265
Lsp1109I	GCAGC	1 cut(s)	126
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	1 cut(s)	30
MboII	GAAGA	4 cut(s)	27, 171, 174, 177
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	1 cut(s)	368
MnlI	CCTC	7 cut(s)	21, 143, 153, 201, 328, 331, 372
MroXI	GAANNNNTTC	1 cut(s)	19
MspI	CCGG	2 cut(s)	40, 252
MspR9I	CCNGG	2 cut(s)	40, 252
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	145
NciI	CCSGG	2 cut(s)	40, 252
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	2 cut(s)	131, 330
PdmI	GAANNNNTTC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	141, 356
Psp1406I	AACGTT	1 cut(s)	244
PspN4I	GGNNCC	2 cut(s)	131, 330
PsuI	RGATCY	1 cut(s)	30
SatI	GCNGC	2 cut(s)	140, 355
Sau3AI	GATC	1 cut(s)	30
ScrFI	CCNGG	2 cut(s)	40, 252
SetI	ASST	4 cut(s)	178, 247, 290, 348
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	7 cut(s)	45, 127, 150, 161, 271, 352, 355
StyD4I	CCNGG	2 cut(s)	38, 250
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	54, 366
TasI	AATT	1 cut(s)	368
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	368
XmnI	GAANNNNTTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.