Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

24538132 .. 24544650

Gene Structure 6519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g31380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGTTGCGGAGCCTGACGCTGCCTCTGCCCGCCGTAATCCCACCAACCTCTTCTCGTCGGTCTACTCTCACACAAAACCGCTGCTATGTCACTCTCCGCCGCACCCCCACCGCCGTCGTTCACAGCCTTCGGATGCGACGGCATGTCGTTCGGATGGCTCCCGAGGAGGAAAGGTTGACCCGTCGCTCCCCTCTCGACTTCCCCATCGAATGGGAAAGACCAAAACCGGGGAGGAGACCAGATATATTTCCCCAGTTTAGCCCCATGAAAACACCTTTACCAACTCCAATGCCAGCGGATCCTCCCGAAGAAGACGAAGAAGAGGACGAAAAGAAAGAGGATGACGAAGAAGGAGAAGACAATCCTGACAAGGAGAACCCAGGGATCCCAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

15.4

Weight (kDa)

5.11

Isoelectric Point (pI)

100.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	65
AciI	CCGC	7 cut(s)	10, 33, 82, 100, 103, 114, 299
AclWI	GGATC	4 cut(s)	296, 309, 382, 395
AfiI	CCNNNNNNNGG	2 cut(s)	213, 230
AhdI	GACNNNNNGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	4 cut(s)	296, 309, 382, 395
Ama87I	CYCGRG	1 cut(s)	164
ApeKI	GCWGC	2 cut(s)	22, 84
AsuC2I	CCSGG	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	164
BamHI	GGATCC	2 cut(s)	301, 387
BbsI	GAAGAC	2 cut(s)	321, 366
BbvI	GCAGC	2 cut(s)	9, 71
BccI	CCATC	2 cut(s)	151, 215
BceAI	ACGGC	3 cut(s)	20, 101, 158
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	1 cut(s)	232
BisI	GCNGC	3 cut(s)	23, 85, 103
BlsI	GCNGC	3 cut(s)	24, 86, 104
Bme1390I	CCNGG	2 cut(s)	231, 384
BmeRI	GACNNNNNGTC	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	164
BmiI	GGNNCC	4 cut(s)	14, 162, 303, 389
BmrFI	CCNGG	2 cut(s)	231, 384
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	126
BmuI	ACTGGG	1 cut(s)	250
BpiI	GAAGAC	2 cut(s)	321, 366
BpuMI	CCSGG	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	4 cut(s)	165, 230, 382, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	213, 230
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	4 cut(s)	165, 230, 382, 383
BseGI	GGATG	3 cut(s)	141, 162, 349
BseLI	CCNNNNNNNGG	2 cut(s)	213, 230
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	182, 250
BseXI	GCAGC	2 cut(s)	9, 71
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	213, 230
BsmAI	GTCTC	1 cut(s)	232
Bso31I	GGTCTC	1 cut(s)	232
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	301, 387
BspACI	CCGC	7 cut(s)	10, 33, 82, 100, 103, 114, 299
BspLI	GGNNCC	4 cut(s)	14, 162, 303, 389
BspPI	GGATC	4 cut(s)	296, 309, 382, 395
BspTNI	GGTCTC	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	4 cut(s)	165, 230, 382, 383
BssMI	GATC	2 cut(s)	301, 387
Bst2UI	CCWGG	1 cut(s)	384
Bst6I	CTCTTC	3 cut(s)	58, 318, 390
BstC8I	GCNNGC	2 cut(s)	33, 297
BstF5I	GGATG	3 cut(s)	141, 162, 349
BstKTI	GATC	2 cut(s)	304, 390
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	301, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	28
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	2 cut(s)	229, 382
BstV1I	GCAGC	2 cut(s)	9, 71
BstV2I	GAAGAC	2 cut(s)	321, 366
BstX2I	RGATCY	2 cut(s)	301, 387
BstYI	RGATCY	2 cut(s)	301, 387
BtsCI	GGATG	3 cut(s)	141, 162, 349
Cac8I	GCNNGC	2 cut(s)	33, 297
CseI	GACGC	1 cut(s)	28
CviAII	CATG	2 cut(s)	146, 268
CviJI	RGCY	4 cut(s)	15, 129, 161, 264
CviKI_1	RGCY	4 cut(s)	15, 129, 161, 264
DpnI	GATC	2 cut(s)	303, 389
DpnII	GATC	2 cut(s)	301, 387
DriI	GACNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	3 cut(s)	58, 318, 390
Eam1105I	GACNNNNNGTC	1 cut(s)	146
EarI	CTCTTC	3 cut(s)	58, 318, 390
EciI	GGCGGA	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	232
Eco88I	CYCGRG	1 cut(s)	164
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	2 cut(s)	149, 271
FaiI	YATR	4 cut(s)	90, 147, 248, 269
FatI	CATG	2 cut(s)	145, 267
FauI	CCCGC	1 cut(s)	40
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	3 cut(s)	23, 85, 103
FokI	GGATG	3 cut(s)	148, 169, 356
Fsp4HI	GCNGC	3 cut(s)	23, 85, 103
GluI	GCNGC	3 cut(s)	23, 85, 103
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	2 cut(s)	149, 271
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	230
Hpy166II	GTNNAC	3 cut(s)	66, 124, 180
Hpy188I	TCNGA	2 cut(s)	135, 156
Hpy188III	TCNNGA	4 cut(s)	164, 197, 308, 368
Hpy8I	GTNNAC	3 cut(s)	66, 124, 180
Hpy99I	CGWCG	4 cut(s)	63, 122, 144, 189
HpyAV	CCTTC	2 cut(s)	140, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	28
Hsp92II	CATG	2 cut(s)	149, 271
Kzo9I	GATC	2 cut(s)	301, 387
LmnI	GCTCC	3 cut(s)	12, 166, 194
LpnPI	CCDG	8 cut(s)	29, 243, 255, 269, 309, 369, 381, 396
Lsp1109I	GCAGC	2 cut(s)	9, 71
LweI	GCATC	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	303, 389
MboI	GATC	2 cut(s)	301, 387
MboII	GAAGA	7 cut(s)	45, 323, 326, 332, 335, 362, 371
MflI	RGATCY	2 cut(s)	301, 387
MnlI	CCTC	9 cut(s)	36, 61, 160, 163, 204, 228, 315, 319, 334
MspA1I	CMGCKG	2 cut(s)	84, 299
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	231, 384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	301, 387
NlaIII	CATG	2 cut(s)	149, 271
NlaIV	GGNNCC	4 cut(s)	14, 162, 303, 389
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	149
PasI	CCCWGGG	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	24, 86, 104
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	4 cut(s)	14, 162, 303, 389
PsuI	RGATCY	2 cut(s)	301, 387
SatI	GCNGC	3 cut(s)	23, 85, 103
Sau3AI	GATC	2 cut(s)	301, 387
ScrFI	CCNGG	2 cut(s)	231, 384
SetI	ASST	3 cut(s)	53, 179, 280
SfaNI	GCATC	1 cut(s)	126
SsiI	CCGC	7 cut(s)	10, 33, 82, 100, 103, 114, 299
StyD4I	CCNGG	2 cut(s)	229, 382
TaqI	TCGA	2 cut(s)	198, 210
TaqII	GACCGA	1 cut(s)	51
TauI	GCSGC	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	22, 84
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	284
Van91I	CCANNNNNTGG	1 cut(s)	213
XceI	RCATGY	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.