Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

5028385 .. 5030951

Gene Structure 2567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G069800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCGTTGCGGAGCCTGACGCTGCCTCTGCCTTTCCCCGCCGTAATTCCACCATTACCACCACCTTCTTCTTCTTCTTCGTCGTCGTCATCTTCTTCTTGTTTGTGTAGTTTTAGACCATACCAGTATAAACCCAATCCCGGTTGCTCTATCGCTCTCCGCGCAAAACCCATCAGCTTTCTCAACCGTCGGAGGCAAAGCCATGTCGTTCGGATGGCTCCCGAGGAAGAAAAGTTGACCCGTCGCTCCCCTCTCGATTTTCCCATTGAATGGGAACGACCTAAGCCCGGGAGGAGACCGGATATATTTCCCCAGTTTAGCCCAATGAAAACACCATTACCGCCTCCACTGCCAGCGGATCCTCCAGAAGAAGATGAAGAAGAGGAAGAAAAGAAAGAGGAGGAGGAAGAAGAAGGAGAAGAAGATCCTGACAAGGAGAACCCAGAAGACCCAGGACAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.44

Weight (kDa)

4.79

Isoelectric Point (pI)

119.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	270
AccII	CGCG	1 cut(s)	162
AciI	CCGC	5 cut(s)	10, 39, 160, 341, 356
AclWI	GGATC	3 cut(s)	353, 366, 419
AfiI	CCNNNNNNNGG	3 cut(s)	140, 270, 287
AgsI	TTSAA	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	3 cut(s)	353, 366, 419
Ama87I	CYCGRG	2 cut(s)	221, 287
ApeKI	GCWGC	1 cut(s)	22
AspLEI	GCGC	1 cut(s)	164
AsuC2I	CCSGG	3 cut(s)	141, 288, 289
AvaI	CYCGRG	2 cut(s)	221, 287
BamHI	GGATCC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	9
BccI	CCATC	2 cut(s)	179, 208
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	453
BcnI	CCSGG	3 cut(s)	141, 288, 289
BcoDI	GTCTC	1 cut(s)	289
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
Bme1390I	CCNGG	4 cut(s)	141, 288, 289, 453
BmeT110I	CYCGRG	2 cut(s)	221, 287
BmiI	GGNNCC	3 cut(s)	14, 219, 360
BmrFI	CCNGG	4 cut(s)	141, 288, 289, 453
BmrI	ACTGGG	1 cut(s)	307
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	348
Bpu10I	CCTNAGC	1 cut(s)	282
BpuMI	CCSGG	3 cut(s)	141, 288, 289
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	222, 287, 451
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 270, 287
Bse1I	ACTGG	2 cut(s)	124, 313
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	222, 287, 451
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	3 cut(s)	140, 270, 287
BseNI	ACTGG	2 cut(s)	124, 313
BseRI	GAGGAG	3 cut(s)	307, 413, 416
BseXI	GCAGC	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	162
BsiHKCI	CYCGRG	2 cut(s)	221, 287
BsiSI	CCGG	3 cut(s)	141, 288, 299
BslI	CCNNNNNNNGG	3 cut(s)	140, 270, 287
BsmAI	GTCTC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	2 cut(s)	221, 287
Bsp143I	GATC	2 cut(s)	358, 424
BspACI	CCGC	5 cut(s)	10, 39, 160, 341, 356
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	3 cut(s)	14, 219, 360
BspPI	GGATC	3 cut(s)	353, 366, 419
BspTNI	GGTCTC	1 cut(s)	289
BsrI	ACTGG	2 cut(s)	124, 313
BssECI	CCNNGG	3 cut(s)	222, 287, 451
BssMI	GATC	2 cut(s)	358, 424
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	2 cut(s)	361, 427
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	2 cut(s)	358, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 161, 349
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	4 cut(s)	139, 286, 287, 451
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	9
BstV2I	GAAGAC	1 cut(s)	453
BstX2I	RGATCY	2 cut(s)	358, 424
BstYI	RGATCY	2 cut(s)	358, 424
BtsCI	GGATG	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	354
CfoI	GCGC	1 cut(s)	164
Cfr9I	CCCGGG	1 cut(s)	287
CseI	GACGC	1 cut(s)	28
CviAII	CATG	1 cut(s)	203
CviJI	RGCY	6 cut(s)	15, 177, 201, 218, 286, 321
CviKI_1	RGCY	6 cut(s)	15, 177, 201, 218, 286, 321
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	360, 426
DpnII	GATC	2 cut(s)	358, 424
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	289
Eco88I	CYCGRG	2 cut(s)	221, 287
EcoRII	CCWGG	1 cut(s)	451
FaeI	CATG	1 cut(s)	206
FaiI	YATR	4 cut(s)	121, 129, 204, 305
FatI	CATG	1 cut(s)	202
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	23
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	23
GsuI	CTGGAG	1 cut(s)	348
HapII	CCGG	3 cut(s)	141, 288, 299
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	206
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HpaII	CCGG	3 cut(s)	141, 288, 299
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	192, 213
Hpy188III	TCNNGA	4 cut(s)	221, 254, 365, 428
Hpy8I	GTNNAC	1 cut(s)	237
Hpy99I	CGWCG	4 cut(s)	85, 88, 192, 246
HpyAV	CCTTC	2 cut(s)	75, 407
HpyCH4III	ACNGT	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 161, 349
HpyF3I	CTNAG	1 cut(s)	282
Hsp92II	CATG	1 cut(s)	206
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	358, 424
LmnI	GCTCC	3 cut(s)	12, 223, 251
Lsp1109I	GCAGC	1 cut(s)	9
MalI	GATC	2 cut(s)	360, 426
MboI	GATC	2 cut(s)	358, 424
MflI	RGATCY	2 cut(s)	358, 424
MluCI	AATT	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	3 cut(s)	141, 288, 299
MspR9I	CCNGG	4 cut(s)	141, 288, 289, 453
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	28, 161, 349
NciI	CCSGG	3 cut(s)	141, 288, 289
NdeII	GATC	2 cut(s)	358, 424
NlaIII	CATG	1 cut(s)	206
NlaIV	GGNNCC	3 cut(s)	14, 219, 360
PflMI	CCANNNNNTGG	1 cut(s)	270
PkrI	GCNGC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	3 cut(s)	14, 219, 360
PsuI	RGATCY	2 cut(s)	358, 424
SatI	GCNGC	1 cut(s)	23
Sau3AI	GATC	2 cut(s)	358, 424
ScrFI	CCNGG	4 cut(s)	141, 288, 289, 453
SetI	ASST	3 cut(s)	67, 179, 283
SmaI	CCCGGG	1 cut(s)	289
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	5 cut(s)	10, 39, 160, 341, 356
StyD4I	CCNGG	4 cut(s)	139, 286, 287, 451
TaaI	ACNGT	1 cut(s)	188
TaqI	TCGA	1 cut(s)	255
TasI	AATT	1 cut(s)	45
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	341, 390
TspMI	CCCGGG	1 cut(s)	287
TspRI	CASTG	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	270
XmaI	CCCGGG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.