Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Forward (+)

4011702 .. 4012220

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATGGCGTCTCATAGCCTCTCATCGCTGAGTGTATCGCCCACTTGGAGTTGGAGTAGGCAATCTCCTTTAGCTTCACCTACTACTTCTGTATCTTCATCCACATCTTTCGCTTCTCGCCGGTGCCGGAGCCACGTGGTTTGTATGGCCCCAGAAGAAGAGAAGCTCACTCGCCGCAACCCTCTGGATTTCCCAATTGAGTGGGAGAGGCCTAAGCCGGGGCGGAGACCTGACATATTCCCACAGTTTAGTCCTATGAAGACACCATTACCGCCTCCGATGCCGTATGACCCGCCTGAGGAAGATGAAGAGGAGGAGGAGAAGAAAGAGGAGGAAGAAGAGCAAGAGCAAGAAGAGGACTCTCCGGAAAAGATTGACCCAGATAAGAATAATAATTCTGTCTTTGGATTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

15.94

Weight (kDa)

4.62

Isoelectric Point (pI)

113.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	4 cut(s)	175, 223, 272, 293
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	8
AfiI	CCNNNNNNNGG	2 cut(s)	218, 298
AluBI	AGCT	2 cut(s)	74, 166
AluI	AGCT	2 cut(s)	74, 166
Alw26I	GTCTC	2 cut(s)	15, 220
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	2 cut(s)	147, 209
AspS9I	GGNCC	1 cut(s)	148
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	69
AxyI	CCTNAGG	1 cut(s)	297
BaeI	ACNNNNGTAYC	2 cut(s)	75, 108
BanI	GGYRCC	1 cut(s)	123
BbrPI	CACGTG	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	266
BceAI	ACGGC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	219
BcoDI	GTCTC	2 cut(s)	15, 220
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	3 cut(s)	125, 131, 150
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	213
BpuMI	CCSGG	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	8
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	218
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 298
Bse118I	RCCGGY	1 cut(s)	120
Bse21I	CCTNAGG	1 cut(s)	297
BseAI	TCCGGA	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	218, 298
BseMII	CTCAG	2 cut(s)	20, 288
BseRI	GAGGAG	4 cut(s)	326, 329, 332, 344
BshFI	GGCC	2 cut(s)	149, 211
BshNI	GGYRCC	1 cut(s)	123
BsiSI	CCGG	4 cut(s)	121, 127, 218, 365
BslI	CCNNNNNNNGG	2 cut(s)	218, 298
BsmAI	GTCTC	2 cut(s)	15, 220
BsmBI	CGTCTC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	149, 211
Bso31I	GGTCTC	1 cut(s)	220
Bsp13I	TCCGGA	1 cut(s)	364
BspACI	CCGC	4 cut(s)	175, 223, 272, 293
BspANI	GGCC	2 cut(s)	149, 211
BspCNI	CTCAG	2 cut(s)	21, 289
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	125, 131, 150
BspQI	GCTCTTC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	120
BssAI	RCCGGY	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	218
BssNI	GRCGYC	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	246
Bst6I	CTCTTC	4 cut(s)	153, 303, 333, 348
BstACI	GRCGYC	1 cut(s)	8
BstBAI	YACGTR	1 cut(s)	136
BstDEI	CTNAG	3 cut(s)	29, 213, 297
BstF5I	GGATG	1 cut(s)	98
BstMAI	GTCTC	2 cut(s)	15, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	217
BstV2I	GAAGAC	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	201
Bsu36I	CCTNAGG	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	149, 211
BtgZI	GCGATG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	148
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviJI	RGCY	7 cut(s)	18, 74, 132, 149, 166, 211, 217
CviKI_1	RGCY	7 cut(s)	18, 74, 132, 149, 166, 211, 217
DdeI	CTNAG	3 cut(s)	29, 213, 297
Eam1104I	CTCTTC	4 cut(s)	153, 303, 333, 348
EarI	CTCTTC	4 cut(s)	153, 303, 333, 348
EciI	GGCGGA	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	220
Eco72I	CACGTG	1 cut(s)	136
Eco81I	CCTNAGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	15
FaiI	YATR	5 cut(s)	15, 146, 236, 257, 288
FauI	CCCGC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	149, 211
HapII	CCGG	4 cut(s)	121, 127, 218, 365
Hin1I	GRCGYC	1 cut(s)	8
HinfI	GANTC	2 cut(s)	359, 408
HpaII	CCGG	4 cut(s)	121, 127, 218, 365
HphI	GGTGA	1 cut(s)	69
Hpy188I	TCNGA	1 cut(s)	279
Hpy188III	TCNNGA	2 cut(s)	185, 365
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	3 cut(s)	29, 213, 297
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	8
Kpn2I	TCCGGA	1 cut(s)	364
LguI	GCTCTTC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	129
LweI	GCATC	1 cut(s)	270
MaeII	ACGT	1 cut(s)	135
MfeI	CAATTG	1 cut(s)	195
MluCI	AATT	2 cut(s)	195, 394
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	32
MroI	TCCGGA	1 cut(s)	364
MspI	CCGG	4 cut(s)	121, 127, 218, 365
MspR9I	CCNGG	1 cut(s)	219
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	280
NciI	CCSGG	1 cut(s)	219
NlaIV	GGNNCC	3 cut(s)	125, 131, 150
PceI	AGGCCT	1 cut(s)	211
PciSI	GCTCTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	353
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	136
PspCI	CACGTG	1 cut(s)	136
PspN4I	GGNNCC	3 cut(s)	125, 131, 150
PspPI	GGNCC	1 cut(s)	148
SapI	GCTCTTC	1 cut(s)	333
SatI	GCNGC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	5 cut(s)	76, 82, 138, 168, 232
SfaNI	GCATC	1 cut(s)	270
SgrAI	CRCCGGYG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	195, 394
SseBI	AGGCCT	1 cut(s)	211
SsiI	CCGC	4 cut(s)	175, 223, 272, 293
StuI	AGGCCT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	1 cut(s)	138
TasI	AATT	2 cut(s)	195, 394
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	408
TspDTI	ATGAA	3 cut(s)	87, 272, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.