Rroxscaffold_2G00151100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005077
Physical Location & Seq
Reverse (-)
88385786 .. 88386581
796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151100.1

Sequence Viewer

Length: 417 bp
ATGATGGCGTCTCATACCCTCTCATCGCTGAGTGTATCGCCCACTTGGAGTTGGAGAAGGCAACCTCCTTTAGCTTCACCTACTACTTCTGTATCTTCATCCGCATCTTTAGCTTCTCGCCGGCGCCGGAGCCACGTGGTTTGTATGGCCCCAGATGAAGAGAAGCTGACTCGCCGCAACCCTCTGGATTTCCCAATTGAGTGGGAGAGGCCTAAGCCGGGGCGGAGACCTGACATATTCCCACAGTTTAGTCCTATGAAGACACCATTACCGCCTCCGATGCCGTATGACCCGCCGGAGGAAGATGAAGAGGAGGAGGAGAAGAAAGAGGAGGAGGAAGAAGAGCAAGAGCAAGAAGAGGACTCTCCGGAAAAGATTGACCCAGATAAGAATAATTCTGTCTTTGGATTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

16.02

Weight (kDa)

4.7

Isoelectric Point (pI)

118.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 367
AciI CCGC 5 cut(s) 102, 175, 223, 272, 293
AcvI CACGTG 1 cut(s) 136
AcyI GRCGYC 2 cut(s) 8, 124
AfiI CCNNNNNNNGG 2 cut(s) 218, 298
AluBI AGCT 3 cut(s) 74, 113, 166
AluI AGCT 3 cut(s) 74, 113, 166
Alw26I GTCTC 2 cut(s) 15, 220
Aor13HI TCCGGA 1 cut(s) 367
AoxI GGCC 2 cut(s) 147, 209
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 69
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BanI GGYRCC 1 cut(s) 123
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 268
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 15, 220
BfoI RGCGCY 1 cut(s) 127
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 3 cut(s) 125, 131, 150
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 113, 270
BpiI GAAGAC 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 136
BsaHI GRCGYC 2 cut(s) 8, 124
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 367
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 298
Bse118I RCCGGY 1 cut(s) 120
BseAI TCCGGA 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 218, 298
BseMII CTCAG 1 cut(s) 20
BseRI GAGGAG 5 cut(s) 326, 329, 332, 344, 347
BshFI GGCC 2 cut(s) 149, 211
BshNI GGYRCC 1 cut(s) 123
BsiSI CCGG 5 cut(s) 121, 127, 218, 296, 368
BslI CCNNNNNNNGG 2 cut(s) 218, 298
BsmAI GTCTC 2 cut(s) 15, 220
BsmBI CGTCTC 1 cut(s) 15
BsnI GGCC 2 cut(s) 149, 211
Bso31I GGTCTC 1 cut(s) 220
Bsp13I TCCGGA 1 cut(s) 367
BspACI CCGC 5 cut(s) 102, 175, 223, 272, 293
BspANI GGCC 2 cut(s) 149, 211
BspCNI CTCAG 1 cut(s) 21
BspEI TCCGGA 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 125, 131, 150
BspQI GCTCTTC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 218
BssNI GRCGYC 2 cut(s) 8, 124
Bst4CI ACNGT 1 cut(s) 246
Bst6I CTCTTC 4 cut(s) 153, 303, 336, 351
BstACI GRCGYC 2 cut(s) 8, 124
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 29, 213
BstF5I GGATG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstMAI GTCTC 2 cut(s) 15, 220
BstMWI GCNNNNNNNGC 2 cut(s) 110, 280
BstSCI CCNGG 1 cut(s) 217
BstV2I GAAGAC 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 149, 211
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 122
CfoI GCGC 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviJI RGCY 7 cut(s) 74, 113, 132, 149, 166, 211, 217
CviKI_1 RGCY 7 cut(s) 74, 113, 132, 149, 166, 211, 217
DdeI CTNAG 2 cut(s) 29, 213
DinI GGCGCC 1 cut(s) 125
Eam1104I CTCTTC 4 cut(s) 153, 303, 336, 351
EarI CTCTTC 4 cut(s) 153, 303, 336, 351
EciI GGCGGA 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 211
Eco31I GGTCTC 1 cut(s) 220
Eco72I CACGTG 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 125
EheI GGCGCC 1 cut(s) 125
Esp3I CGTCTC 1 cut(s) 15
FaiI YATR 5 cut(s) 15, 146, 236, 257, 288
FauI CCCGC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 175
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 175
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 2 cut(s) 149, 211
HapII CCGG 5 cut(s) 121, 127, 218, 296, 368
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 2 cut(s) 8, 124
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 3 cut(s) 169, 362, 408
HpaII CCGG 5 cut(s) 121, 127, 218, 296, 368
HphI GGTGA 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 279
Hpy188III TCNNGA 2 cut(s) 185, 368
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 246
HpyCH4IV ACGT 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 280
HpyF3I CTNAG 2 cut(s) 29, 213
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 2 cut(s) 8, 124
HspAI GCGC 1 cut(s) 124
KasI GGCGCC 1 cut(s) 123
Kpn2I TCCGGA 1 cut(s) 367
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 1 cut(s) 129
LweI GCATC 2 cut(s) 113, 270
MaeII ACGT 1 cut(s) 135
MboII GAAGA 9 cut(s) 87, 170, 271, 314, 320, 334, 350, 353, 368
MfeI CAATTG 1 cut(s) 195
MluCI AATT 2 cut(s) 195, 394
Mly113I GGCGCC 1 cut(s) 124
MlyI GAGTC 2 cut(s) 163, 356
MmeI TCCRAC 1 cut(s) 32
MreI CGCCGGCG 1 cut(s) 120
MroI TCCGGA 1 cut(s) 367
MroNI GCCGGC 1 cut(s) 120
MspI CCGG 5 cut(s) 121, 127, 218, 296, 368
MspR9I CCNGG 1 cut(s) 219
MunI CAATTG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 110, 280
NaeI GCCGGC 1 cut(s) 122
NarI GGCGCC 1 cut(s) 124
NciI CCSGG 1 cut(s) 219
NgoMIV GCCGGC 1 cut(s) 120
NlaIV GGNNCC 3 cut(s) 125, 131, 150
PceI AGGCCT 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 336
PdiI GCCGGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 408
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 2 cut(s) 163, 356
PluTI GGCGCC 1 cut(s) 127
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 2 cut(s) 163, 356
Ppu21I YACGTR 1 cut(s) 136
PspCI CACGTG 1 cut(s) 136
PspN4I GGNNCC 3 cut(s) 125, 131, 150
PspPI GGNCC 1 cut(s) 148
SapI GCTCTTC 1 cut(s) 336
SatI GCNGC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 163, 356
ScrFI CCNGG 1 cut(s) 219
SetI ASST 7 cut(s) 67, 76, 82, 115, 138, 168, 232
SfaNI GCATC 2 cut(s) 113, 270
SfoI GGCGCC 1 cut(s) 125
SgrAI CRCCGGYG 1 cut(s) 120
Sse9I AATT 2 cut(s) 195, 394
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 5 cut(s) 102, 175, 223, 272, 293
SspDI GGCGCC 1 cut(s) 123
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 1 cut(s) 246
TaiI ACGT 1 cut(s) 138
TasI AATT 2 cut(s) 195, 394
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 408
TspDTI ATGAA 4 cut(s) 87, 171, 272, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.