AT2G17380

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004589
Physical Location & Seq
Forward (+)
7552992 .. 7555163
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17380.1

Sequence Viewer

Length: 486 bp
ATGATACATTTCGTGTTACTAGTCAGTCGACAAGGGAAAGTAAGGCTCACCAAGTGGTATTCGCCGTATACGCAGAAGGAAAGATCTAAGGTCATACGTGAACTCAGTGGAGTGATTCTGAACCGAGGTCCCAAGCTCTGCAATTTTATTGAATGGAGAGGATACAAGGTTGTCTACAAAAGATATGCAAGCTTGTACTTCTGCATGTGCATTGATGAGGCGGATAACGAGTTAGAGGTACTGGAGATAATTCATCACTACGTCGAGATTCTTGACCGCTACTTTGGCAGTGTGTGTGAACTCGATTTGATTTTTAACTTCCACAAGGCGTATTATATACTCGATGAGCTGTTGATCGCCGGAGAACTTCAAGAGTCAAGCAAGAAAACAGTTGCAAGGATAATATCAGCCCAGGATCAATTGGTGGAAGTTGCGAAAGAGGAGGCGAGTTCCATAAGTAATATAATTGCTCAGGCTACCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

161

Amino Acids

18.76

Weight (kDa)

6.9

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 140 2e-55 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 28, 68, 174
AciI CCGC 2 cut(s) 221, 277
AclWI GGATC 1 cut(s) 423
AdeI CACNNNGTG 1 cut(s) 54
AfaI GTAC 2 cut(s) 197, 240
AgsI TTSAA 2 cut(s) 152, 371
AhlI ACTAGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 411
AluBI AGCT 3 cut(s) 136, 192, 349
AluI AGCT 3 cut(s) 136, 192, 349
AlwI GGATC 1 cut(s) 423
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 1 cut(s) 413
BciVI GTATCC 1 cut(s) 155
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 1 cut(s) 20
BfuI GTATCC 1 cut(s) 155
BglII AGATCT 1 cut(s) 83
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 413
BpmI CTGGAG 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 124, 411
Bse1I ACTGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 124, 411
BseMII CTCAG 2 cut(s) 118, 485
BseNI ACTGG 1 cut(s) 246
BseRI GAGGAG 1 cut(s) 455
BsiSI CCGG 1 cut(s) 360
BslFI GGGAC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 83, 354, 415
BspACI CCGC 2 cut(s) 221, 277
BspCNI CTCAG 2 cut(s) 117, 484
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 1 cut(s) 423
BsrI ACTGG 1 cut(s) 246
BssECI CCNNGG 2 cut(s) 124, 411
BssMI GATC 3 cut(s) 83, 354, 415
BssNAI GTATAC 1 cut(s) 69
Bst1107I GTATAC 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 391
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 3 cut(s) 87, 104, 471
BstKTI GATC 3 cut(s) 86, 357, 418
BstMBI GATC 3 cut(s) 83, 354, 415
BstMWI GCNNNNNNNGC 2 cut(s) 70, 285
BstNI CCWGG 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BstZ17I GTATAC 1 cut(s) 69
BsuI GTATCC 1 cut(s) 155
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 112, 295
Cac8I GCNNGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 196, 239
CviAII CATG 1 cut(s) 205
CviJI RGCY 6 cut(s) 46, 136, 192, 349, 410, 476
CviKI_1 RGCY 6 cut(s) 46, 136, 192, 349, 410, 476
CviQI GTAC 2 cut(s) 196, 239
DdeI CTNAG 3 cut(s) 87, 104, 471
DpnI GATC 3 cut(s) 85, 356, 417
DpnII GATC 3 cut(s) 83, 354, 415
DraIII CACNNNGTG 1 cut(s) 54
EciI GGCGGA 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 208
FaiI YATR 8 cut(s) 69, 95, 186, 206, 336, 338, 455, 464
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 204
FblI GTMKAC 3 cut(s) 28, 68, 174
FspBI CTAG 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 263
HapII CCGG 1 cut(s) 360
Hin1II CATG 1 cut(s) 208
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 3 cut(s) 115, 268, 374
HpaII CCGG 1 cut(s) 360
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 5 cut(s) 29, 69, 101, 175, 299
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 3 cut(s) 265, 272, 371
Hpy8I GTNNAC 5 cut(s) 29, 69, 101, 175, 299
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 2 cut(s) 97, 261
HpyCH4V TGCA 5 cut(s) 141, 188, 204, 210, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 285
HpyF3I CTNAG 3 cut(s) 87, 104, 471
HpySE526I ACGT 2 cut(s) 97, 261
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 3 cut(s) 83, 354, 415
LpnPI CCDG 5 cut(s) 227, 373, 398, 425, 458
MaeI CTAG 1 cut(s) 20
MaeII ACGT 2 cut(s) 97, 261
MaeIII GTNAC 1 cut(s) 15
MalI GATC 3 cut(s) 85, 356, 417
MboI GATC 3 cut(s) 83, 354, 415
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 83
MluCI AATT 4 cut(s) 142, 249, 419, 465
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 6 cut(s) 119, 152, 211, 229, 433, 436
MseI TTAA 1 cut(s) 315
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 413
MunI CAATTG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 2 cut(s) 70, 285
NdeII GATC 3 cut(s) 83, 354, 415
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 130
NspI RCATGY 1 cut(s) 208
PfeI GAWTC 2 cut(s) 115, 268
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Ppu21I YACGTR 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 2 cut(s) 197, 240
RsaNI GTAC 2 cut(s) 196, 239
SalI GTCGAC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 3 cut(s) 83, 354, 415
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 413
SetI ASST 9 cut(s) 93, 100, 130, 138, 171, 194, 240, 264, 351
SinI GGWCC 1 cut(s) 128
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 4 cut(s) 142, 249, 419, 465
SsiI CCGC 2 cut(s) 221, 277
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 411
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 2 cut(s) 100, 264
TaqI TCGA 4 cut(s) 28, 264, 303, 342
TasI AATT 4 cut(s) 142, 249, 419, 465
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 2 cut(s) 115, 268
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 112, 295
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 2 cut(s) 112, 295
VpaK11BI GGWCC 1 cut(s) 128
XceI RCATGY 1 cut(s) 208
XmiI GTMKAC 3 cut(s) 28, 68, 174
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.