RLG00000002461

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004589
Physical Location & Seq
Reverse (-)
34487559 .. 34499269
11711 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002461

Sequence Viewer

Length: 564 bp
ATGAGCCGAATTCATTTTGTCATTCTTGTTAGCCGACAAGGAAAGGTGAGGCTGACTAAATGGTTTTCAACCTATTCCCAGAAAGAAAGATCCAAGGTAATGCGGGAATTGAGTGGTATAATACTCAATCGAGGCCCCAGGCTATGCAACTTCATAGAGTGGAGAGGACTTAAAGTTGTCTATAAAAGATACGCGAGCCTGTATTTCTGTATGTGCATTGACCAAGAAGATAATGAACTGGAGATTCTTGAAATAATTCACCATTACGTTGAGATACTTGATCGATATTTTGGCAGCGTTTGTGAGCTGGATTTGATTTTTAACTTCCATAAGGCTTACTATATACTAGATGAACTTCTACTTGCTGGTGAGCTTCAAGAGTCAAGTAAGAGAGCAATGGGACGAATGATAGCTATACATGACCGATTTGTGGAGGCTGCTAAAGAGGAGGCCAGTTCAATAAGCAATTTACTCGCACAATTTGTTACTCTAGAAATAAGTGAAATAAATCTTGCAAAACTAAGTAATAGAAAAGTCATGAATTATAACTATGACAATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

188

Amino Acids

22.03

Weight (kDa)

7.68

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 4 - 141 3.6e-52 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 546
AccII CGCG 1 cut(s) 194
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 4 cut(s) 69, 251, 377, 459
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 3 cut(s) 307, 373, 413
AluI AGCT 3 cut(s) 307, 373, 413
AlwI GGATC 1 cut(s) 84
AoxI GGCC 2 cut(s) 133, 450
ApeKI GCWGC 2 cut(s) 294, 437
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 3 cut(s) 58, 251, 380
BbvI GCAGC 2 cut(s) 306, 424
BcgI CGANNNNNNTGC 2 cut(s) 454, 488
BciT130I CCWGG 1 cut(s) 139
BfaI CTAG 2 cut(s) 347, 491
BisI GCNGC 2 cut(s) 295, 438
BlsI GCNGC 2 cut(s) 296, 439
Bme1390I CCNGG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 260
Bsa29I ATCGAT 1 cut(s) 283
BsaJI CCNNGG 2 cut(s) 93, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 243, 453
Bse3DI GCAATG 1 cut(s) 402
BseBI CCWGG 1 cut(s) 139
BseCI ATCGAT 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 93, 137
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 402
BseNI ACTGG 2 cut(s) 243, 453
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 2 cut(s) 306, 424
Bsh1236I CGCG 1 cut(s) 194
BshFI GGCC 2 cut(s) 135, 452
BshVI ATCGAT 1 cut(s) 283
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 1 cut(s) 430
BsmFI GGGAC 1 cut(s) 414
BsnI GGCC 2 cut(s) 135, 452
Bsp143I GATC 2 cut(s) 89, 280
BspACI CCGC 1 cut(s) 103
BspANI GGCC 2 cut(s) 135, 452
BspDI ATCGAT 1 cut(s) 283
BspFNI CGCG 1 cut(s) 194
BspHI TCATGA 1 cut(s) 537
BspLI GGNNCC 1 cut(s) 136
BspPI GGATC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 2 cut(s) 243, 453
BssECI CCNNGG 2 cut(s) 93, 137
BssMI GATC 2 cut(s) 89, 280
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 521
BstFNI CGCG 1 cut(s) 194
BstKTI GATC 2 cut(s) 92, 283
BstMBI GATC 2 cut(s) 89, 280
BstNI CCWGG 1 cut(s) 139
BstSCI CCNGG 1 cut(s) 137
BstUI CGCG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 306, 424
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
Bsu15I ATCGAT 1 cut(s) 283
BsuRI GGCC 2 cut(s) 135, 452
BsuTUI ATCGAT 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 196
CciI TCATGA 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 134
ClaI ATCGAT 1 cut(s) 283
CviAII CATG 3 cut(s) 419, 538, 561
DdeI CTNAG 1 cut(s) 521
DpnI GATC 2 cut(s) 91, 282
DpnII GATC 2 cut(s) 89, 280
Eco130I CCWWGG 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
FaeI CATG 3 cut(s) 422, 541, 564
FaqI GGGAC 1 cut(s) 414
FatI CATG 3 cut(s) 418, 537, 560
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 295, 438
Fsp4HI GCNGC 2 cut(s) 295, 438
FspBI CTAG 2 cut(s) 347, 491
GluI GCNGC 2 cut(s) 295, 438
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 2 cut(s) 135, 452
Hin1II CATG 3 cut(s) 422, 541, 564
HinfI GANTC 2 cut(s) 244, 380
HphI GGTGA 3 cut(s) 58, 251, 380
Hpy188III TCNNGA 4 cut(s) 248, 377, 491, 538
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 3 cut(s) 147, 216, 515
HpyF3I CTNAG 1 cut(s) 521
HpySE526I ACGT 1 cut(s) 267
Hsp92II CATG 3 cut(s) 422, 541, 564
Kzo9I GATC 2 cut(s) 89, 280
LpnPI CCDG 8 cut(s) 92, 124, 151, 212, 224, 293, 351, 466
Lsp1109I GCAGC 2 cut(s) 306, 424
MaeI CTAG 2 cut(s) 347, 491
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 484
MalI GATC 2 cut(s) 91, 282
MboI GATC 2 cut(s) 89, 280
MboII GAAGA 1 cut(s) 239
MflI RGATCY 1 cut(s) 89
MluCI AATT 6 cut(s) 9, 107, 255, 466, 479, 541
MlyI GAGTC 1 cut(s) 389
MnlI CCTC 6 cut(s) 42, 125, 158, 427, 439, 442
MroXI GAANNNNTTC 1 cut(s) 255
MseI TTAA 2 cut(s) 171, 321
MspR9I CCNGG 1 cut(s) 139
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 1 cut(s) 194
NdeII GATC 2 cut(s) 89, 280
NlaIII CATG 3 cut(s) 422, 541, 564
NlaIV GGNNCC 1 cut(s) 136
PagI TCATGA 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 255
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 2 cut(s) 296, 439
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PsiI TTATAA 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 137
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 89
SaqAI TTAA 2 cut(s) 171, 321
SatI GCNGC 2 cut(s) 295, 438
Sau3AI GATC 2 cut(s) 89, 280
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 1 cut(s) 139
SetI ASST 7 cut(s) 48, 74, 99, 270, 309, 375, 415
Sse9I AATT 6 cut(s) 9, 107, 255, 466, 479, 541
SsiI CCGC 1 cut(s) 103
SspMI CTAG 2 cut(s) 347, 491
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 270
TaqI TCGA 2 cut(s) 130, 283
TaqII GACCGA 1 cut(s) 438
TasI AATT 6 cut(s) 9, 107, 255, 466, 479, 541
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 2 cut(s) 171, 321
Tru9I TTAA 2 cut(s) 171, 321
TseI GCWGC 2 cut(s) 294, 437
TspDTI ATGAA 4 cut(s) 142, 249, 366, 554
XapI RAATTY 1 cut(s) 9
XbaI TCTAGA 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 255
XspI CTAG 2 cut(s) 347, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.