FvH4_3g25720

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004589
Physical Location & Seq
Forward (+)
18585773 .. 18591003
5231 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25720.t2

Sequence Viewer

Length: 486 bp
ATGATTCATTTTGTCATTCTTGTTAGCCGGCAAGGAAAGGTGAGGCTTACCAAATGGTTTTCAACCTATTCGCAGAAGGAACGATCTAAGGTGATGCGGGAACTGAGCGGAATAATACTCAATCGAGGCCCCAAGCTATGCAACTTCATAGAATGGAGAGGACTTAAAGTTGTCTATAAAAGATATGCCAGCTTGTATTTCTGCATGTGTATTGACCAAGATGACAATGAACTAGAGACACTTCAACTAATTCACCATTATGTTGAGATACTCGATCGCTATTTTGGTTGTGTTTGTGAGCTGGATTTGATTTTTCACTTCCATAAGGCTTACTACATATTGGATGAACTTTTGCTTGCTGGTGAGCTTCAAGAGTCAAGCAAGAGAGCAGTAGGACGAATGTTAGCTATACATGATCGATTTGTGGAGGTTGCTAAAGAGGAAGCTAGTTCAATTGGCAATTTAATCTCACAAGTCACCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

162

Amino Acids

18.91

Weight (kDa)

7.67

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 12 - 149 1.8e-51 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 108
AciI CCGC 2 cut(s) 97, 108
AgsI TTSAA 4 cut(s) 63, 245, 371, 453
AluBI AGCT 6 cut(s) 136, 192, 301, 367, 407, 446
AluI AGCT 6 cut(s) 136, 192, 301, 367, 407, 446
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 5 cut(s) 52, 103, 245, 374, 469
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 2 cut(s) 233, 447
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 130
BmsI GCATC 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 418
Bse118I RCCGGY 1 cut(s) 27
BseCI ATCGAT 1 cut(s) 418
BseGI GGATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 230
BsnI GGCC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 83, 274, 415
BspACI CCGC 2 cut(s) 97, 108
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 1 cut(s) 96
BspDI ATCGAT 1 cut(s) 418
BspLI GGNNCC 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 3 cut(s) 83, 274, 415
BstC8I GCNNGC 3 cut(s) 29, 190, 357
BstDEI CTNAG 2 cut(s) 87, 104
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 3 cut(s) 86, 277, 418
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 3 cut(s) 83, 274, 415
BstMCI CGRYCG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 418
BsuRI GGCC 1 cut(s) 129
BsuTUI ATCGAT 1 cut(s) 418
BtsCI GGATG 1 cut(s) 349
Cac8I GCNNGC 3 cut(s) 29, 190, 357
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 418
CviAII CATG 3 cut(s) 205, 413, 481
DdeI CTNAG 2 cut(s) 87, 104
DpnI GATC 3 cut(s) 85, 276, 417
DpnII GATC 3 cut(s) 83, 274, 415
EcoO109I RGGNCCY 1 cut(s) 128
FaeI CATG 3 cut(s) 208, 416, 484
FatI CATG 3 cut(s) 204, 412, 480
FauI CCCGC 1 cut(s) 90
FokI GGATG 1 cut(s) 356
FspBI CTAG 2 cut(s) 233, 447
HaeIII GGCC 1 cut(s) 129
HapII CCGG 1 cut(s) 28
Hin1II CATG 3 cut(s) 208, 416, 484
HinfI GANTC 2 cut(s) 4, 374
HpaII CCGG 1 cut(s) 28
HphI GGTGA 5 cut(s) 52, 103, 245, 374, 469
Hpy188III TCNNGA 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 141, 204
HpyF3I CTNAG 2 cut(s) 87, 104
Hsp92II CATG 3 cut(s) 208, 416, 484
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
Kzo9I GATC 3 cut(s) 83, 274, 415
LpnPI CCDG 4 cut(s) 41, 202, 287, 345
LweI GCATC 1 cut(s) 84
MaeI CTAG 2 cut(s) 233, 447
MaeIII GTNAC 1 cut(s) 475
MalI GATC 3 cut(s) 85, 276, 417
MbiI CCGCTC 1 cut(s) 108
MboI GATC 3 cut(s) 83, 274, 415
MfeI CAATTG 1 cut(s) 453
MluCI AATT 3 cut(s) 249, 453, 460
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 5 cut(s) 36, 119, 152, 421, 433
MroNI GCCGGC 1 cut(s) 27
MseI TTAA 2 cut(s) 165, 464
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 28
MunI CAATTG 1 cut(s) 453
NaeI GCCGGC 1 cut(s) 29
NdeII GATC 3 cut(s) 83, 274, 415
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 3 cut(s) 208, 416, 484
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 208
PdiI GCCGGC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 4
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 128
PvuI CGATCG 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 2 cut(s) 165, 464
Sau3AI GATC 3 cut(s) 83, 274, 415
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 383
SfaNI GCATC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 258
Sse9I AATT 3 cut(s) 249, 453, 460
SsiI CCGC 2 cut(s) 97, 108
SspMI CTAG 2 cut(s) 233, 447
TaqI TCGA 3 cut(s) 124, 273, 418
TasI AATT 3 cut(s) 249, 453, 460
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 2 cut(s) 165, 464
Tru9I TTAA 2 cut(s) 165, 464
TseFI GTSAC 1 cut(s) 475
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 3 cut(s) 136, 243, 360
XceI RCATGY 1 cut(s) 208
XspI CTAG 2 cut(s) 233, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.