FvH4_2g17210

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004589
Physical Location & Seq
Forward (+)
14895383 .. 14897328
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g17210.t1

Sequence Viewer

Length: 486 bp
ATGATTCAGTTTGTGCTTCTGATAAGTAGGCAAGGCAAAGTTAGGTTGACTAAATGGTACTCGCCGTACACCCAAAAGGAAAGAACTAAGGTGCTTCGTGAGCTCAGTGGAGTGATCCTTGCAAGGGGTCCCAAGCTCTGCAATTTTGTGGAGTGGAGAGAATACAAAGTTGTTTATAAGAGATATGCGAGTCTGTATTTCTGTATGTGTATTGATCAAGATGATAATGAGCTAGAGGTCCTTGAGATCATACATCATTTTGTCGAAATTCTTGACCGATACTTTGGCAGTGTGTGTGAATTGGATTTGATCTTTAACTTCCACAAGGCCTACTATATACTGGATGAACTTTTGATTGCTGGTGAACTTCAAGAGTCGAGCAAGAAAACGATTGCACGGTTGATAGCAGCACAGGATTCTCTGGTGGAGACTGCAAAAGAGCAGGCTAGTTCATTAAGTAATATGATTGCACAGGCCACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

162

Amino Acids

18.8

Weight (kDa)

6.83

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 140 4.2e-55 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 267
AfaI GTAC 2 cut(s) 59, 68
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 1 cut(s) 371
AluBI AGCT 3 cut(s) 103, 136, 232
AluI AGCT 3 cut(s) 103, 136, 232
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 109
AoxI GGCC 2 cut(s) 327, 474
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 267
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspS9I GGNCC 2 cut(s) 128, 238
AsuHPI GGTGA 1 cut(s) 374
AvaII GGWCC 2 cut(s) 128, 238
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 419
BceAI ACGGC 1 cut(s) 49
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 2 cut(s) 233, 447
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme18I GGWCC 2 cut(s) 128, 238
BmgT120I GGNCC 2 cut(s) 128, 238
BmiI GGNNCC 2 cut(s) 129, 130
BpuEI CTTGAG 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 419
BshFI GGCC 2 cut(s) 329, 476
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 329, 476
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 4 cut(s) 114, 214, 246, 309
BspANI GGCC 2 cut(s) 329, 476
BspCNI CTCAG 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 129, 130
BspPI GGATC 1 cut(s) 109
BsrI ACTGG 1 cut(s) 345
BssMI GATC 4 cut(s) 114, 214, 246, 309
Bst4CI ACNGT 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 2 cut(s) 87, 104
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 4 cut(s) 117, 217, 249, 312
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 4 cut(s) 114, 214, 246, 309
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 419
BsuRI GGCC 2 cut(s) 329, 476
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 112, 295
Cac8I GCNNGC 1 cut(s) 444
Cfr13I GGNCC 2 cut(s) 128, 238
Csp6I GTAC 2 cut(s) 58, 67
CviJI RGCY 6 cut(s) 103, 136, 232, 329, 446, 476
CviKI_1 RGCY 6 cut(s) 103, 136, 232, 329, 446, 476
CviQI GTAC 2 cut(s) 58, 67
DdeI CTNAG 2 cut(s) 87, 104
DpnI GATC 4 cut(s) 116, 216, 248, 311
DpnII GATC 4 cut(s) 114, 214, 246, 309
Ecl136II GAGCTC 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 2 cut(s) 128, 238
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 2 cut(s) 128, 238
EcoT38I GRGCYC 1 cut(s) 105
FaiI YATR 7 cut(s) 177, 186, 206, 251, 336, 338, 464
FaqI GGGAC 1 cut(s) 114
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 2 cut(s) 233, 447
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 329, 476
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 4 cut(s) 4, 190, 374, 416
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 3 cut(s) 48, 69, 365
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 4 cut(s) 98, 218, 272, 371
Hpy8I GTNNAC 3 cut(s) 48, 69, 365
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 5 cut(s) 122, 141, 395, 434, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 87, 104
KflI GGGWCCC 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 4 cut(s) 114, 214, 246, 309
LpnPI CCDG 6 cut(s) 326, 345, 398, 407, 428, 458
Lsp1109I GCAGC 1 cut(s) 419
MaeI CTAG 2 cut(s) 233, 447
MalI GATC 4 cut(s) 116, 216, 248, 311
MboI GATC 4 cut(s) 114, 214, 246, 309
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 142, 267, 299
MlyI GAGTC 2 cut(s) 199, 383
MnlI CCTC 1 cut(s) 229
MseI TTAA 2 cut(s) 315, 455
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 4 cut(s) 114, 214, 246, 309
NlaIV GGNNCC 2 cut(s) 129, 130
PceI AGGCCT 1 cut(s) 329
PfeI GAWTC 2 cut(s) 4, 416
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 2 cut(s) 198, 382
PpsI GAGTC 2 cut(s) 198, 382
PpuMI RGGWCCY 2 cut(s) 128, 238
PsiI TTATAA 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 105
Psp5II RGGWCCY 2 cut(s) 128, 238
PspN4I GGNNCC 2 cut(s) 129, 130
PspPI GGNCC 2 cut(s) 128, 238
PspPPI RGGWCCY 2 cut(s) 128, 238
RsaI GTAC 2 cut(s) 59, 68
RsaNI GTAC 2 cut(s) 58, 67
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 315, 455
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 4 cut(s) 114, 214, 246, 309
Sau96I GGNCC 2 cut(s) 128, 238
SchI GAGTC 2 cut(s) 199, 383
SduI GDGCHC 1 cut(s) 105
SetI ASST 6 cut(s) 47, 93, 105, 138, 234, 240
SinI GGWCC 2 cut(s) 128, 238
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 3 cut(s) 142, 267, 299
SseBI AGGCCT 1 cut(s) 329
SspMI CTAG 2 cut(s) 233, 447
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 329
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 264, 377
TaqII GACCGA 1 cut(s) 291
TasI AATT 3 cut(s) 142, 267, 299
TfiI GAWTC 2 cut(s) 4, 416
Tru1I TTAA 2 cut(s) 315, 455
Tru9I TTAA 2 cut(s) 315, 455
TscAI CASTG 2 cut(s) 112, 295
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 2 cut(s) 360, 441
TspRI CASTG 2 cut(s) 112, 295
VpaK11BI GGWCC 2 cut(s) 128, 238
XapI RAATTY 1 cut(s) 267
XspI CTAG 2 cut(s) 233, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.