Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004589

Physical Location & Seq

Genomic Coordinates Reverse (-)

273141 .. 275127

Gene Structure 1987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G001200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATTCATTTTGTCATTCTTGTTAGTCGACAAGGAAAAGTGAGGCTGACCAAATGGTTTTCACCCTATACCCAGAAGGAACGATCTAAGGTAATGCGGGAACTGAGTGGCATAATACTCAATCGGGGCCCCAAGTTGTGCAACTTTGTGGAGTGGAGGGGTTTTAAAGTTGTGTATAAAAGATATGCCAGCCTCTATTTCTGCATGTGTGTTGACCAGAACGATAACGAACTGGAGACCCTTGAAATAATTCACCATTATGTTGAGATACTGGATCGCTATTTCGGCAGCGTTTGTGAGCTAGACTTGATTTTTAACTTTCATAAGGCTTACTATATATTGGATGAGCTTCTGCTTGCTGGCGAGCTTCAAGAGTCAAGCAAGAGAACAGTCGGGCGGATGATAGCTACGCATGATCGATTTGTGGAGGCTGCTAAAGAGGAGGCGAGTTCAATAGGCACTTTCATCGCACAAGTCCGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

162

Amino Acids

18.94

Weight (kDa)

8.32

Isoelectric Point (pI)

32.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17380 AT4G35410 AT4G35410
fragaria_vesca	FvH4_2g17210 FvH4_3g25720 FvH4_3g25720 FvH4_5g26670 FvH4_5g26670
malus_domestica	MD05G1145600.v1.1 MD06G1000900.v1.1 MD10G1145000.v1.1
prunus_persica	Prupe.5G001200_v2.0.a1 Prupe.8G183400_v2.0.a1
pyrus_communis	pycom05g14040 pycom10g12480
rosa_chinensis	RchiOBHm_Chr6g0281691
rosa_laevigata	RLG00000002461 RLG00000012950
rosa_multiflora	Rmu_ssc0000126.1_g000072
rosa_roxburghii	Rroxscaffold_7G00186910
rosa_rugosa	Rorug07G0169900 Rorug07G0170000
rosa_samantha	Rh1BG348200 Rh6BG258600 Rh6CG257500 Rh7AG309800 Rh7BG301000 Rh7CG329000 Rh7DG309400
rosa_wichuraiana	Rw6G022140 Rw7G026280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	3 cut(s)	97, 397, 478
AclWI	GGATC	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	245, 371, 453
AluBI	AGCT	4 cut(s)	301, 349, 367, 407
AluI	AGCT	4 cut(s)	301, 349, 367, 407
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	282
AoxI	GGCC	1 cut(s)	127
ApaI	GGGCCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	288, 431
Asp700I	GAANNNNTTC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	127, 128
AsuHPI	GGTGA	2 cut(s)	54, 245
BaeGI	GKGCMC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	300, 418
BcgI	CGANNNNNNTGC	2 cut(s)	448, 482
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	302
BisI	GCNGC	2 cut(s)	289, 432
BlsI	GCNGC	2 cut(s)	290, 433
BmgT120I	GGNCC	2 cut(s)	127, 128
BmiI	GGNNCC	3 cut(s)	128, 129, 130
BpmI	CTGGAG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	418
BsaI	GGTCTC	1 cut(s)	230
Bse1I	ACTGG	2 cut(s)	237, 276
BseCI	ATCGAT	1 cut(s)	418
BseGI	GGATG	2 cut(s)	349, 405
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	237, 276
BseRI	GAGGAG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	300, 418
BshFI	GGCC	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	129
Bso31I	GGTCTC	1 cut(s)	230
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	3 cut(s)	83, 274, 415
BspACI	CCGC	3 cut(s)	97, 397, 478
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	96
BspDI	ATCGAT	1 cut(s)	418
BspLI	GGNNCC	3 cut(s)	128, 129, 130
BspPI	GGATC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	237, 276
BssMI	GATC	3 cut(s)	83, 274, 415
Bst4CI	ACNGT	1 cut(s)	391
BstC8I	GCNNGC	4 cut(s)	190, 357, 361, 365
BstDEI	CTNAG	2 cut(s)	87, 104
BstF5I	GGATG	2 cut(s)	349, 405
BstKTI	GATC	3 cut(s)	86, 277, 418
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	3 cut(s)	83, 274, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNSI	RCATGY	2 cut(s)	208, 484
BstSLI	GKGCMC	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	300, 418
Bsu15I	ATCGAT	1 cut(s)	418
BsuRI	GGCC	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	418
BtgZI	GCGATG	1 cut(s)	451
BtsCI	GGATG	2 cut(s)	349, 405
Cac8I	GCNNGC	4 cut(s)	190, 357, 361, 365
Cfr13I	GGNCC	2 cut(s)	127, 128
ClaI	ATCGAT	1 cut(s)	418
CviAII	CATG	3 cut(s)	205, 413, 481
CviJI	RGCY	9 cut(s)	46, 129, 192, 301, 329, 349, 367, 407, 431
CviKI_1	RGCY	9 cut(s)	46, 129, 192, 301, 329, 349, 367, 407, 431
DdeI	CTNAG	2 cut(s)	87, 104
DpnI	GATC	3 cut(s)	85, 276, 417
DpnII	GATC	3 cut(s)	83, 274, 415
DraI	TTTAAA	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	230
EcoO109I	RGGNCCY	2 cut(s)	127, 128
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	3 cut(s)	208, 416, 484
FatI	CATG	3 cut(s)	204, 412, 480
FauI	CCCGC	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	289, 432
FokI	GGATG	2 cut(s)	356, 412
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	289, 432
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	2 cut(s)	289, 432
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	208, 416, 484
HincII	GTYRAC	2 cut(s)	29, 214
HindII	GTYRAC	2 cut(s)	29, 214
HinfI	GANTC	2 cut(s)	4, 374
HphI	GGTGA	2 cut(s)	54, 245
Hpy166II	GTNNAC	2 cut(s)	29, 214
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	2 cut(s)	29, 214
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	2 cut(s)	141, 204
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	2 cut(s)	87, 104
Hsp92II	CATG	3 cut(s)	208, 416, 484
Kzo9I	GATC	3 cut(s)	83, 274, 415
LpnPI	CCDG	6 cut(s)	86, 202, 218, 230, 257, 345
Lsp1109I	GCAGC	2 cut(s)	300, 418
MaeI	CTAG	1 cut(s)	302
MalI	GATC	3 cut(s)	85, 276, 417
MboI	GATC	3 cut(s)	83, 274, 415
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	6 cut(s)	36, 150, 203, 421, 433, 436
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	2 cut(s)	165, 315
MslI	CAYNNNNRTG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	285
NdeII	GATC	3 cut(s)	83, 274, 415
NlaIII	CATG	3 cut(s)	208, 416, 484
NlaIV	GGNNCC	3 cut(s)	128, 129, 130
NspI	RCATGY	2 cut(s)	208, 484
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	290, 433
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	128, 129, 130
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	2 cut(s)	127, 128
RseI	CAYNNNNRTG	1 cut(s)	258
SalI	GTCGAC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	165, 315
SatI	GCNGC	2 cut(s)	289, 432
Sau3AI	GATC	3 cut(s)	83, 274, 415
Sau96I	GGNCC	2 cut(s)	127, 128
SchI	GAGTC	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	5 cut(s)	93, 303, 351, 369, 409
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	3 cut(s)	97, 397, 478
SspMI	CTAG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	28, 418
TasI	AATT	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	165, 315
Tru9I	TTAA	2 cut(s)	165, 315
TseI	GCWGC	2 cut(s)	288, 431
TspDTI	ATGAA	2 cut(s)	311, 454
XceI	RCATGY	2 cut(s)	208, 484
XmiI	GTMKAC	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.