Rh1BG348200

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004589
Physical Location & Seq
Forward (+)
48120087 .. 48120829
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG348200.1

Sequence Viewer

Length: 396 bp
ATGCGGATTCAGTTTGTGCTTCTGATAAGTAGGCAAGGAAAAGTGAGGTTGACTAAGTGGTACTCGCCATATACCCAGAAGGAAAGAACAAAGGTGCTTCGCGAGCTCAGTGGGGTGATCCTTGCGCGAGGTCCCAAGCTCTGCAATTTTGTGGAGTGGAGAGAATACAAAGTTGTTTATAAGAGATATGCTAGTCTTTATTTCTGTATGTGTATCGATCAAGATGATAATAAACTAGAGGTCCTTGAGATTATTCATCATTTTGTGGAAATTCTAGACCGATACTTTGGCAGTGTATGTGAATTGGATTTGATCTTTAACTTCCACAAGGTATGTATATTCTGCTTGTTTCAGGATCAACATTTTTGTTTCGTTGAAATTATTTTTCAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

131

Amino Acids

15.96

Weight (kDa)

8.69

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 3 - 112 1.1e-44 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccII CGCG 2 cut(s) 102, 127
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 112, 363
AcsI RAATTY 1 cut(s) 270
AfaI GTAC 1 cut(s) 62
AgsI TTSAA 2 cut(s) 377, 389
AluBI AGCT 2 cut(s) 106, 139
AluI AGCT 2 cut(s) 106, 139
Alw21I GWGCWC 1 cut(s) 108
AlwI GGATC 2 cut(s) 112, 363
ApoI RAATTY 1 cut(s) 270
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 2 cut(s) 131, 241
AsuHPI GGTGA 1 cut(s) 127
AvaII GGWCC 2 cut(s) 131, 241
BanII GRGCYC 1 cut(s) 108
Bbv12I GWGCWC 1 cut(s) 108
BfaI CTAG 3 cut(s) 192, 236, 275
Bme18I GGWCC 2 cut(s) 131, 241
BmgT120I GGNCC 2 cut(s) 131, 241
BmiI GGNNCC 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 266
Bsa29I ATCGAT 1 cut(s) 216
BseCI ATCGAT 1 cut(s) 216
BseMII CTCAG 1 cut(s) 121
Bsh1236I CGCG 2 cut(s) 102, 127
BshVI ATCGAT 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 4 cut(s) 117, 217, 312, 355
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 1 cut(s) 4
BspCNI CTCAG 1 cut(s) 120
BspDI ATCGAT 1 cut(s) 216
BspFNI CGCG 2 cut(s) 102, 127
BspLI GGNNCC 1 cut(s) 133
BspPI GGATC 2 cut(s) 112, 363
BssMI GATC 4 cut(s) 117, 217, 312, 355
BstC8I GCNNGC 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 54, 107
BstFNI CGCG 2 cut(s) 102, 127
BstHHI GCGC 1 cut(s) 127
BstKTI GATC 4 cut(s) 120, 220, 315, 358
BstMBI GATC 4 cut(s) 117, 217, 312, 355
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstUI CGCG 2 cut(s) 102, 127
Bsu15I ATCGAT 1 cut(s) 216
BsuTUI ATCGAT 1 cut(s) 216
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 115, 298
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 104
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 2 cut(s) 131, 241
ClaI ATCGAT 1 cut(s) 216
Csp6I GTAC 1 cut(s) 61
CviJI RGCY 2 cut(s) 106, 139
CviKI_1 RGCY 2 cut(s) 106, 139
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 2 cut(s) 54, 107
DpnI GATC 4 cut(s) 119, 219, 314, 357
DpnII GATC 4 cut(s) 117, 217, 312, 355
Ecl136II GAGCTC 1 cut(s) 106
Eco24I GRGCYC 1 cut(s) 108
Eco47I GGWCC 2 cut(s) 131, 241
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoO109I RGGNCCY 2 cut(s) 131, 241
EcoT38I GRGCYC 1 cut(s) 108
FaiI YATR 8 cut(s) 70, 72, 180, 189, 209, 298, 334, 338
FaqI GGGAC 1 cut(s) 117
FriOI GRGCYC 1 cut(s) 108
FspBI CTAG 3 cut(s) 192, 236, 275
GlaI GCGC 1 cut(s) 126
HhaI GCGC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 1 cut(s) 7
HphI GGTGA 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 4 cut(s) 101, 221, 275, 353
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 2 cut(s) 54, 107
HspAI GCGC 1 cut(s) 125
Kzo9I GATC 4 cut(s) 117, 217, 312, 355
LpnPI CCDG 2 cut(s) 89, 338
MaeI CTAG 3 cut(s) 192, 236, 275
MalI GATC 4 cut(s) 119, 219, 314, 357
MboI GATC 4 cut(s) 117, 217, 312, 355
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 4 cut(s) 145, 270, 302, 378
MnlI CCTC 3 cut(s) 39, 122, 232
MseI TTAA 1 cut(s) 318
MvnI CGCG 2 cut(s) 102, 127
MwoI GCNNNNNNNGC 1 cut(s) 103
NdeII GATC 4 cut(s) 117, 217, 312, 355
NlaIV GGNNCC 1 cut(s) 133
NruI TCGCGA 1 cut(s) 102
PfeI GAWTC 1 cut(s) 7
PpuMI RGGWCCY 2 cut(s) 131, 241
PsiI TTATAA 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 108
Psp5II RGGWCCY 2 cut(s) 131, 241
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 2 cut(s) 131, 241
PspPPI RGGWCCY 2 cut(s) 131, 241
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 318
Sau3AI GATC 4 cut(s) 117, 217, 312, 355
Sau96I GGNCC 2 cut(s) 131, 241
SduI GDGCHC 1 cut(s) 108
SetI ASST 7 cut(s) 50, 96, 108, 133, 141, 243, 333
SinI GGWCC 2 cut(s) 131, 241
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 4 cut(s) 145, 270, 302, 378
SsiI CCGC 1 cut(s) 4
SspMI CTAG 3 cut(s) 192, 236, 275
SstI GAGCTC 1 cut(s) 108
TaqI TCGA 1 cut(s) 216
TaqII GACCGA 1 cut(s) 294
TasI AATT 4 cut(s) 145, 270, 302, 378
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 115, 298
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 2 cut(s) 115, 298
VpaK11BI GGWCC 2 cut(s) 131, 241
XapI RAATTY 1 cut(s) 270
XbaI TCTAGA 1 cut(s) 274
XspI CTAG 3 cut(s) 192, 236, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.