Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000126.1

Orthogroup ID

OG0004589

Physical Location & Seq

Genomic Coordinates Reverse (-)

345687 .. 348239

Gene Structure 2553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000126.1_g000072.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggtgaaccggtggaatatttgctgcgagttgtatgaagcttccggtggccggttcggtgagtttccgaccggttcttggagtggggccaccggttctggactcctagaatcgagttcttcaaggtgtgaggtggaggcagaaaaggcttcaaggcaaggaaaagtgaggttgactaagtggtactcgccatatacccaaaaggaaagaacaaaggtgcttcgcgagctcagtggggtgatccttgcgcgaggtcccaagctctgcaattttgtggagtggagagaatacaaagttgtttataagagatatgctagtctgtatttctgtatgtgtatcgatcaagatgataatgaactagaggtccttgagattattcatcattttgtggaaattctagaccgatactttggcagtgtatgtgaattggatttgatctttaacttccacaaggcctactatatactggatgaacttttgattgctggtgaactccaagagtcgagcaagaaaacggttgcacgattgatagcagcacaggattctttggtggagactgcaaaagagcaggctagttcaataagtaatatgattgcgcaggccaccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

203

Amino Acids

23.15

Weight (kDa)

5.74

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17380 AT4G35410 AT4G35410
fragaria_vesca	FvH4_2g17210 FvH4_3g25720 FvH4_3g25720 FvH4_5g26670 FvH4_5g26670
malus_domestica	MD05G1145600.v1.1 MD06G1000900.v1.1 MD10G1145000.v1.1
prunus_persica	Prupe.5G001200_v2.0.a1 Prupe.8G183400_v2.0.a1
pyrus_communis	pycom05g14040 pycom10g12480
rosa_chinensis	RchiOBHm_Chr6g0281691
rosa_laevigata	RLG00000002461 RLG00000012950
rosa_multiflora	Rmu_ssc0000126.1_g000072
rosa_roxburghii	Rroxscaffold_7G00186910
rosa_rugosa	Rorug07G0169900 Rorug07G0170000
rosa_samantha	Rh1BG348200 Rh6BG258600 Rh6CG257500 Rh7AG309800 Rh7BG301000 Rh7CG329000 Rh7DG309400
rosa_wichuraiana	Rw6G022140 Rw7G026280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
Acc16I	TGCGCA	1 cut(s)	597
AccII	CGCG	2 cut(s)	225, 250
AclWI	GGATC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	393
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	2 cut(s)	51, 78
AgeI	ACCGGT	3 cut(s)	9, 71, 92
AgsI	TTSAA	3 cut(s)	123, 153, 579
AloI	GAACNNNNNNTCC	2 cut(s)	348, 380
AluBI	AGCT	3 cut(s)	41, 229, 262
AluI	AGCT	3 cut(s)	41, 229, 262
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	1 cut(s)	235
AoxI	GGCC	4 cut(s)	49, 87, 453, 600
ApeKI	GCWGC	2 cut(s)	24, 533
ApoI	RAATTY	1 cut(s)	393
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AsiGI	ACCGGT	3 cut(s)	9, 71, 92
AspLEI	GCGC	2 cut(s)	250, 598
AspS9I	GGNCC	3 cut(s)	87, 254, 364
AsuHPI	GGTGA	4 cut(s)	16, 71, 250, 500
AvaII	GGWCC	2 cut(s)	254, 364
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	11, 545
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	5 cut(s)	107, 315, 359, 398, 573
BisI	GCNGC	2 cut(s)	25, 534
BlsI	GCNGC	2 cut(s)	26, 535
Bme18I	GGWCC	2 cut(s)	254, 364
BmgT120I	GGNCC	3 cut(s)	87, 254, 364
BmiI	GGNNCC	2 cut(s)	88, 256
BpuEI	CTTGAG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	339
BsaWI	WCCGGW	4 cut(s)	9, 44, 71, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 78
Bse118I	RCCGGY	4 cut(s)	9, 51, 71, 92
Bse1I	ACTGG	1 cut(s)	471
BseCI	ATCGAT	1 cut(s)	339
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	2 cut(s)	51, 78
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	11, 545
Bsh1236I	CGCG	2 cut(s)	225, 250
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	51, 89, 455, 602
BshTI	ACCGGT	3 cut(s)	9, 71, 92
BshVI	ATCGAT	1 cut(s)	339
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	5 cut(s)	10, 45, 52, 72, 93
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	51, 78
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	4 cut(s)	51, 89, 455, 602
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	240, 340, 435
Bsp68I	TCGCGA	1 cut(s)	225
BspANI	GGCC	4 cut(s)	51, 89, 455, 602
BspCNI	CTCAG	1 cut(s)	243
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	2 cut(s)	225, 250
BspLI	GGNNCC	2 cut(s)	88, 256
BspPI	GGATC	1 cut(s)	235
BsrFI	RCCGGY	4 cut(s)	9, 51, 71, 92
BsrI	ACTGG	1 cut(s)	471
BssAI	RCCGGY	4 cut(s)	9, 51, 71, 92
BssMI	GATC	3 cut(s)	240, 340, 435
Bst4CI	ACNGT	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	227, 570, 600
BstDEI	CTNAG	2 cut(s)	177, 230
BstF5I	GGATG	1 cut(s)	475
BstFNI	CGCG	2 cut(s)	225, 250
BstHHI	GCGC	2 cut(s)	250, 598
BstKTI	GATC	3 cut(s)	243, 343, 438
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	3 cut(s)	240, 340, 435
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 226
BstUI	CGCG	2 cut(s)	225, 250
BstV1I	GCAGC	2 cut(s)	11, 545
Bsu15I	ATCGAT	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	51, 89, 455, 602
BsuTUI	ATCGAT	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	475
BtsI	GCAGTG	1 cut(s)	421
BtsIMutI	CAGTG	2 cut(s)	238, 421
BtuMI	TCGCGA	1 cut(s)	225
Cac8I	GCNNGC	3 cut(s)	227, 570, 600
CfoI	GCGC	2 cut(s)	250, 598
Cfr10I	RCCGGY	4 cut(s)	9, 51, 71, 92
Cfr13I	GGNCC	3 cut(s)	87, 254, 364
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	1 cut(s)	184
CspAI	ACCGGT	3 cut(s)	9, 71, 92
CviJI	RGCY	9 cut(s)	41, 51, 89, 149, 229, 262, 455, 572, 602
CviKI_1	RGCY	9 cut(s)	41, 51, 89, 149, 229, 262, 455, 572, 602
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	177, 230
DpnI	GATC	3 cut(s)	242, 342, 437
DpnII	GATC	3 cut(s)	240, 340, 435
EaeI	YGGCCR	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	2 cut(s)	254, 364
Eco53kI	GAGCTC	1 cut(s)	229
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	2 cut(s)	254, 364
EcoT38I	GRGCYC	1 cut(s)	231
FaqI	GGGAC	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	25, 534
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	25, 534
FspBI	CTAG	5 cut(s)	107, 315, 359, 398, 573
FspI	TGCGCA	1 cut(s)	597
GlaI	GCGC	2 cut(s)	249, 597
GluI	GCNGC	2 cut(s)	25, 534
HaeIII	GGCC	4 cut(s)	51, 89, 455, 602
HapII	CCGG	5 cut(s)	10, 45, 52, 72, 93
HhaI	GCGC	2 cut(s)	250, 598
Hin6I	GCGC	2 cut(s)	248, 596
HinP1I	GCGC	2 cut(s)	248, 596
HincII	GTYRAC	1 cut(s)	174
HindII	GTYRAC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	4 cut(s)	102, 110, 500, 542
HpaII	CCGG	5 cut(s)	10, 45, 52, 72, 93
HphI	GGTGA	4 cut(s)	16, 71, 250, 500
Hpy166II	GTNNAC	3 cut(s)	7, 174, 491
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	4 cut(s)	99, 224, 344, 398
Hpy8I	GTNNAC	3 cut(s)	7, 174, 491
HpyCH4III	ACNGT	1 cut(s)	517
HpyCH4V	TGCA	3 cut(s)	267, 521, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 226
HpyF3I	CTNAG	2 cut(s)	177, 230
HspAI	GCGC	2 cut(s)	248, 596
Kzo9I	GATC	3 cut(s)	240, 340, 435
Lsp1109I	GCAGC	2 cut(s)	11, 545
MaeI	CTAG	5 cut(s)	107, 315, 359, 398, 573
MalI	GATC	3 cut(s)	242, 342, 437
MboI	GATC	3 cut(s)	240, 340, 435
MboII	GAAGA	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	231
MluCI	AATT	3 cut(s)	268, 393, 425
MlyI	GAGTC	2 cut(s)	96, 509
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	5 cut(s)	124, 130, 162, 245, 355
MseI	TTAA	1 cut(s)	441
MspI	CCGG	5 cut(s)	10, 45, 52, 72, 93
MvnI	CGCG	2 cut(s)	225, 250
MwoI	GCNNNNNNNGC	2 cut(s)	146, 226
NdeII	GATC	3 cut(s)	240, 340, 435
NlaIV	GGNNCC	2 cut(s)	88, 256
NruI	TCGCGA	1 cut(s)	225
NsbI	TGCGCA	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	110, 542
PinAI	ACCGGT	3 cut(s)	9, 71, 92
PkrI	GCNGC	2 cut(s)	26, 535
PleI	GAGTC	2 cut(s)	96, 508
PpsI	GAGTC	2 cut(s)	96, 508
PpuMI	RGGWCCY	2 cut(s)	254, 364
PsiI	TTATAA	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	2 cut(s)	254, 364
PspN4I	GGNNCC	2 cut(s)	88, 256
PspPI	GGNCC	3 cut(s)	87, 254, 364
PspPPI	RGGWCCY	2 cut(s)	254, 364
RruI	TCGCGA	1 cut(s)	225
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	25, 534
Sau3AI	GATC	3 cut(s)	240, 340, 435
Sau96I	GGNCC	3 cut(s)	87, 254, 364
SchI	GAGTC	2 cut(s)	96, 509
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	43, 128, 135, 173, 219, 231, 256, 264, 366
SinI	GGWCC	2 cut(s)	254, 364
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	268, 393, 425
SseBI	AGGCCT	1 cut(s)	455
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	5 cut(s)	107, 315, 359, 398, 573
SstI	GAGCTC	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	517
TaqI	TCGA	3 cut(s)	113, 339, 503
TaqII	GACCGA	1 cut(s)	417
TasI	AATT	3 cut(s)	268, 393, 425
TfiI	GAWTC	2 cut(s)	110, 542
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	238, 421
TseI	GCWGC	2 cut(s)	24, 533
TspDTI	ATGAA	4 cut(s)	51, 368, 369, 486
TspRI	CASTG	2 cut(s)	238, 421
VpaK11BI	GGWCC	2 cut(s)	254, 364
XapI	RAATTY	1 cut(s)	393
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	5 cut(s)	107, 315, 359, 398, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.