Rh7AG309800

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004589
Physical Location & Seq
Forward (+)
34824990 .. 34827606
2617 bp
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UTR
Exon/CDS
Intron
Rh7AG309800.1

Sequence Viewer

Length: 408 bp
ATGGAAAAAAAGGTAATGCGGGAATTGAGTGGAATAATACTCAATCGAGGCCCCAAGCTGTGCAACTTCATAGAGTGGAGAGGACTTAAAGTTGTCTATAAAAGATACGCGAGCCTCTATTTTTGTATGTGTATTGACCAAGAAGACAATGAACTGGAGATTCTTGAAATAATTCACCATTACGTTGAGATACTTGACCGATATTTTGGCAGTGTTTGTGAGCTGGATTTGATTTTTAACTTCCATAAGGCTTACTATATATTAGATGAACTTCTACTTGCTGGTGAGCTGCAAGAGTCAAGTAAGAGAGCAATAGGACGAATGATAGCTATACATGATCGATTTGTGGAGGCTGCTAAAGAGGAGGCCAGTTCAATAAGCAATTTACTCGCACAAGTTAATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

135

Amino Acids

15.8

Weight (kDa)

5.39

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 2 - 114 2.8e-42 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 110
AciI CCGC 1 cut(s) 19
AgsI TTSAA 2 cut(s) 167, 375
AluBI AGCT 4 cut(s) 58, 223, 289, 329
AluI AGCT 4 cut(s) 58, 223, 289, 329
AoxI GGCC 2 cut(s) 49, 366
ApeKI GCWGC 2 cut(s) 289, 353
ArsI GACNNNNNNTTYG 2 cut(s) 188, 220
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 2 cut(s) 167, 296
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 276, 340
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BisI GCNGC 2 cut(s) 290, 354
BlsI GCNGC 2 cut(s) 291, 355
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 52
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 340
Bse1I ACTGG 2 cut(s) 159, 369
BseCI ATCGAT 1 cut(s) 340
BseNI ACTGG 2 cut(s) 159, 369
BseRI GAGGAG 1 cut(s) 377
BseXI GCAGC 2 cut(s) 276, 340
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 2 cut(s) 51, 368
BshVI ATCGAT 1 cut(s) 340
BsnI GGCC 2 cut(s) 51, 368
Bsp143I GATC 1 cut(s) 337
BspACI CCGC 1 cut(s) 19
BspANI GGCC 2 cut(s) 51, 368
BspDI ATCGAT 1 cut(s) 340
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 52
BsrI ACTGG 2 cut(s) 159, 369
BssMI GATC 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 112
BstFNI CGCG 1 cut(s) 110
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 276, 340
BstV2I GAAGAC 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 340
BsuRI GGCC 2 cut(s) 51, 368
BsuTUI ATCGAT 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 112
Cfr13I GGNCC 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 340
CviAII CATG 1 cut(s) 335
CviJI RGCY 9 cut(s) 51, 58, 114, 223, 251, 289, 329, 353, 368
CviKI_1 RGCY 9 cut(s) 51, 58, 114, 223, 251, 289, 329, 353, 368
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 50
FaeI CATG 1 cut(s) 338
FaiI YATR 9 cut(s) 71, 99, 128, 246, 258, 260, 332, 336, 404
FatI CATG 1 cut(s) 334
FauI CCCGC 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 290, 354
Fsp4HI GCNGC 2 cut(s) 290, 354
GluI GCNGC 2 cut(s) 290, 354
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 2 cut(s) 51, 368
Hin1II CATG 1 cut(s) 338
HinfI GANTC 2 cut(s) 160, 296
HphI GGTGA 2 cut(s) 167, 296
Hpy188III TCNNGA 1 cut(s) 164
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 2 cut(s) 63, 292
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 1 cut(s) 338
Kzo9I GATC 1 cut(s) 337
LpnPI CCDG 4 cut(s) 140, 209, 267, 382
Lsp1109I GCAGC 2 cut(s) 276, 340
MaeII ACGT 1 cut(s) 183
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 1 cut(s) 155
MluCI AATT 3 cut(s) 23, 171, 382
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 6 cut(s) 41, 74, 125, 343, 355, 358
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 3 cut(s) 87, 237, 399
MvnI CGCG 1 cut(s) 110
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 1 cut(s) 160
PkrI GCNGC 2 cut(s) 291, 355
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 50
SaqAI TTAA 3 cut(s) 87, 237, 399
SatI GCNGC 2 cut(s) 290, 354
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 305
SetI ASST 6 cut(s) 15, 60, 186, 225, 291, 331
Sse9I AATT 3 cut(s) 23, 171, 382
SsiI CCGC 1 cut(s) 19
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 46, 340
TaqII GACCGA 1 cut(s) 213
TasI AATT 3 cut(s) 23, 171, 382
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 3 cut(s) 87, 237, 399
Tru9I TTAA 3 cut(s) 87, 237, 399
TscAI CASTG 1 cut(s) 217
TseI GCWGC 2 cut(s) 289, 353
TspDTI ATGAA 3 cut(s) 58, 165, 282
TspRI CASTG 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.