AT4G35410

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004589
Physical Location & Seq
Forward (+)
16832339 .. 16834002
1664 bp
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UTR
Exon/CDS
Intron
AT4G35410.1

Sequence Viewer

Length: 321 bp
ATGATACATTTTGTGCTTCTAGTTAGCCGGCAAGGAAAGGTAAGGCTCACCAAATGGTATTCTCCTTATGCACAGAAGGAAAGATCTAAGGTTATACGTGAACTCAGTGGAGTGATTCTGAATCGAGGTCCAAAGCTCTGCAATTTTGTTGAATGGAGAGGATACAAAGTTGTTTACAAAAGATATGCAAGTCTCTACTTCTGCATGTGCATTGATCAGGAGGATAACGAGTTAGAGGTCCTTGAGATCATTCATCACTATGTTGAGATTCTCGATCGCTATTTTGGAAGTGTGAGTACCAAAAAAACCAGCACCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

106

Amino Acids

12.62

Weight (kDa)

9.23

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 99 1.4e-38 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 298
AgsI TTSAA 1 cut(s) 152
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 197
AlwNI CAGNNNCTG 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 128, 238
AsuHPI GGTGA 1 cut(s) 40
AvaII GGWCC 2 cut(s) 128, 238
BarI GAAGNNNNNNTAC 2 cut(s) 280, 312
BciVI GTATCC 1 cut(s) 155
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 20
BfuI GTATCC 1 cut(s) 155
BglII AGATCT 1 cut(s) 83
Bme18I GGWCC 2 cut(s) 128, 238
BmgT120I GGNCC 2 cut(s) 128, 238
BpuEI CTTGAG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 27
BseMII CTCAG 1 cut(s) 118
Bsh1285I CGRYCG 1 cut(s) 277
BsiEI CGRYCG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 197
Bsp143I GATC 4 cut(s) 83, 214, 246, 274
BspCNI CTCAG 1 cut(s) 117
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssMI GATC 4 cut(s) 83, 214, 246, 274
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 87, 104
BstKTI GATC 4 cut(s) 86, 217, 249, 277
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 83, 214, 246, 274
BstMCI CGRYCG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BsuI GTATCC 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 29
CaiI CAGNNNCTG 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 128, 238
Csp6I GTAC 1 cut(s) 297
CviAII CATG 1 cut(s) 205
CviJI RGCY 3 cut(s) 27, 46, 136
CviKI_1 RGCY 3 cut(s) 27, 46, 136
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 2 cut(s) 87, 104
DpnI GATC 4 cut(s) 85, 216, 248, 276
DpnII GATC 4 cut(s) 83, 214, 246, 274
Eco47I GGWCC 2 cut(s) 128, 238
EcoO109I RGGNCCY 1 cut(s) 238
FaeI CATG 1 cut(s) 208
FaiI YATR 5 cut(s) 69, 95, 186, 206, 261
FatI CATG 1 cut(s) 204
FbaI TGATCA 1 cut(s) 214
FspBI CTAG 1 cut(s) 20
HapII CCGG 1 cut(s) 28
Hin1II CATG 1 cut(s) 208
HinfI GANTC 3 cut(s) 115, 121, 268
HpaII CCGG 1 cut(s) 28
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 101, 175
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 2 cut(s) 218, 272
Hpy8I GTNNAC 2 cut(s) 101, 175
HpyAV CCTTC 1 cut(s) 70
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 5 cut(s) 71, 141, 188, 204, 210
HpyF3I CTNAG 2 cut(s) 87, 104
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 1 cut(s) 208
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 4 cut(s) 83, 214, 246, 274
LpnPI CCDG 2 cut(s) 41, 203
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 97
MalI GATC 4 cut(s) 85, 216, 248, 276
MboI GATC 4 cut(s) 83, 214, 246, 274
MflI RGATCY 1 cut(s) 83
MluCI AATT 1 cut(s) 142
MnlI CCTC 4 cut(s) 119, 152, 214, 229
MroNI GCCGGC 1 cut(s) 27
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 28
NaeI GCCGGC 1 cut(s) 29
NdeII GATC 4 cut(s) 83, 214, 246, 274
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 1 cut(s) 208
NspI RCATGY 1 cut(s) 208
PdiI GCCGGC 1 cut(s) 29
PfeI GAWTC 3 cut(s) 115, 121, 268
Ple19I CGATCG 1 cut(s) 277
Ppu21I YACGTR 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
PspPI GGNCC 2 cut(s) 128, 238
PspPPI RGGWCCY 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 315
PsuI RGATCY 1 cut(s) 83
PvuI CGATCG 1 cut(s) 277
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 1 cut(s) 258
Sau3AI GATC 4 cut(s) 83, 214, 246, 274
Sau96I GGNCC 2 cut(s) 128, 238
SetI ASST 7 cut(s) 42, 93, 100, 130, 138, 240, 317
SinI GGWCC 2 cut(s) 128, 238
SmiMI CAYNNNNRTG 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 1 cut(s) 142
SspMI CTAG 1 cut(s) 20
TaiI ACGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 124, 273
TasI AATT 1 cut(s) 142
TfiI GAWTC 3 cut(s) 115, 121, 268
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 128, 238
XceI RCATGY 1 cut(s) 208
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.