MD06G1000900.v1.1

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0004589
Physical Location & Seq
Reverse (-)
94977 .. 96677
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1000900.v1.1.491

Sequence Viewer

Length: 486 bp
ATGATTCATTTCGTGATTCTTGTTAGCCGACAAGGAAAAGTGAGGCTGACCAAATGGTTTTCAACCTATCCCCAGAAGGAACGATCTAAGGTAATGCGGGAACTGAGTGGCATAATACTGAATCGGGGTCCCAAGTTGTGCAACTTTGTGGAGTGGAGGGGATTCAAAGTTGTTTACAAAAGATATGCGAGCCTCTATTTCTGCATGTGTGTTGATGAGGATGACAACGAATTGGAAATTCTTGAAATAATTCACCATTACGTTGAGATACTCGATCGCTATTTCGGCAGCGTTTGTGAATTGGACTTGATTTTTAACTTCCACAAGGCCTACTTTATATTGGATGAGCTTCTACTTGCAGGGGAGCTTCAAGAGTCGAGCAAGAGAACAGTCGGACGCATGATAGCTACACATGATCGATTTGTGGAGGCTGCTAAAGAGGAGGCCAGTTCCATAGGCACTTTGATCGCACAAGTTCGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

162

Amino Acids

18.9

Weight (kDa)

6.96

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 139 4.1e-54 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 97
AcsI RAATTY 1 cut(s) 237
AgsI TTSAA 4 cut(s) 63, 166, 245, 371
AluBI AGCT 3 cut(s) 349, 367, 407
AluI AGCT 3 cut(s) 349, 367, 407
AoxI GGCC 2 cut(s) 327, 444
ApeKI GCWGC 2 cut(s) 288, 431
ApoI RAATTY 1 cut(s) 237
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 245
AvaII GGWCC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 300, 418
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BisI GCNGC 2 cut(s) 289, 432
BlsI GCNGC 2 cut(s) 290, 433
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 129, 130
Bsa29I ATCGAT 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 447
BseCI ATCGAT 1 cut(s) 418
BseGI GGATG 2 cut(s) 226, 349
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 447
BseRI GAGGAG 1 cut(s) 455
BseXI GCAGC 2 cut(s) 300, 418
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 329, 446
BshVI ATCGAT 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 329, 446
Bsp143I GATC 4 cut(s) 83, 274, 415, 465
BspACI CCGC 1 cut(s) 97
BspANI GGCC 2 cut(s) 329, 446
BspCNI CTCAG 1 cut(s) 96
BspDI ATCGAT 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 129, 130
BsrI ACTGG 1 cut(s) 447
BssMI GATC 4 cut(s) 83, 274, 415, 465
Bst4CI ACNGT 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 87, 104
BstF5I GGATG 2 cut(s) 226, 349
BstKTI GATC 4 cut(s) 86, 277, 418, 468
BstMBI GATC 4 cut(s) 83, 274, 415, 465
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 285
BstNSI RCATGY 2 cut(s) 208, 484
BstV1I GCAGC 2 cut(s) 300, 418
Bsu15I ATCGAT 1 cut(s) 418
BsuRI GGCC 2 cut(s) 329, 446
BsuTUI ATCGAT 1 cut(s) 418
BtsCI GGATG 2 cut(s) 226, 349
Cac8I GCNNGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 418
CseI GACGC 1 cut(s) 405
CviAII CATG 4 cut(s) 205, 400, 413, 481
CviJI RGCY 9 cut(s) 27, 46, 192, 329, 349, 367, 407, 431, 446
CviKI_1 RGCY 9 cut(s) 27, 46, 192, 329, 349, 367, 407, 431, 446
DdeI CTNAG 2 cut(s) 87, 104
DpnI GATC 4 cut(s) 85, 276, 417, 467
DpnII GATC 4 cut(s) 83, 274, 415, 465
Eco147I AGGCCT 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 128
FaeI CATG 4 cut(s) 208, 403, 416, 484
FaiI YATR 8 cut(s) 113, 186, 206, 338, 401, 414, 455, 482
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 114
FatI CATG 4 cut(s) 204, 399, 412, 480
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 289, 432
FokI GGATG 2 cut(s) 233, 356
Fsp4HI GCNGC 2 cut(s) 289, 432
GluI GCNGC 2 cut(s) 289, 432
HaeIII GGCC 2 cut(s) 329, 446
HgaI GACGC 1 cut(s) 405
Hin1II CATG 4 cut(s) 208, 403, 416, 484
HinfI GANTC 5 cut(s) 4, 16, 121, 162, 374
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 175
Hpy188I TCNGA 1 cut(s) 395
Hpy188III TCNNGA 3 cut(s) 13, 242, 371
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 141, 204, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 285
HpyF3I CTNAG 2 cut(s) 87, 104
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 4 cut(s) 208, 403, 416, 484
KflI GGGWCCC 1 cut(s) 128
Kzo9I GATC 4 cut(s) 83, 274, 415, 465
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 3 cut(s) 86, 345, 460
Lsp1109I GCAGC 2 cut(s) 300, 418
MaeII ACGT 1 cut(s) 261
MalI GATC 4 cut(s) 85, 276, 417, 467
MboI GATC 4 cut(s) 83, 274, 415, 465
MluCI AATT 4 cut(s) 230, 237, 249, 299
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 7 cut(s) 36, 150, 203, 211, 421, 433, 436
MroXI GAANNNNTTC 1 cut(s) 249
MseI TTAA 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 285
NdeII GATC 4 cut(s) 83, 274, 415, 465
NlaIII CATG 4 cut(s) 208, 403, 416, 484
NlaIV GGNNCC 2 cut(s) 129, 130
NspI RCATGY 2 cut(s) 208, 484
PceI AGGCCT 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 4 cut(s) 4, 16, 121, 162
PkrI GCNGC 2 cut(s) 290, 433
Ple19I CGATCG 1 cut(s) 277
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 129, 130
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PvuI CGATCG 1 cut(s) 277
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 289, 432
Sau3AI GATC 4 cut(s) 83, 274, 415, 465
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 383
SetI ASST 6 cut(s) 68, 93, 264, 351, 369, 409
SinI GGWCC 1 cut(s) 128
Sse9I AATT 4 cut(s) 230, 237, 249, 299
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 1 cut(s) 97
StuI AGGCCT 1 cut(s) 329
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 1 cut(s) 264
TaqI TCGA 3 cut(s) 273, 377, 418
TasI AATT 4 cut(s) 230, 237, 249, 299
TfiI GAWTC 4 cut(s) 4, 16, 121, 162
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 2 cut(s) 288, 431
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 1 cut(s) 237
XceI RCATGY 2 cut(s) 208, 484
XmnI GAANNNNTTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.