Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004589

Physical Location & Seq

Genomic Coordinates Forward (+)

13758818 .. 13759566

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0170000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATATTGTGAATAGTGCTTTCAGTTTAAGTGGTGGAACTATATCTTGCTTTATTTTCCACTTCTATGCATACATGACAAGTCAGCACTTGGTTTGTATTTCTGAAAGCACCCCGAATCTCAAAAGACTTGTTCTACCAGTTCGGGACAACGATATACTAGTTAATGAGTTTGAAGAAGCTGCAAATAACTGGCCACTTCTTGAGTCATTGACTATTCCTGGTAGCTTTTCTATTGAACTCATGAAGGCAATTGGTAAGCACTGCAAGAACCTCAGCGAGCTGAAAATGATGCACCGGTTTGACATGAATTGTGCAGAGAACATTCTTGCATATGCACCAAGTTTGAAGGTCATAAGTCTTCGGTGCAATAGAGTGCACAGGGATGCTATACTTTTCTTGCTCAAGGAATTGAGGCAGTTAGAAGTGATGAATATAACTCACTGCCTCATTCTGGATCACTTTCCAAAACCTGGTTTTTGGTCTGTGCTCCCCGAACTTGATGAGTTTGTCCTTCAAGAGGCTTCGCGGCTAAAGAAGTTTCTGTTTTGTCAGATGCGCTCCTGCAATGTTTGCCACTTTCAGATTAATTCAAATGGGCTCTTGTTCTGGACTCAAAACAATGAAGCCATTTGGATAATGGACGAGGTGAGTACCCTTGCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

Clat_adaptor_s

Protein Analysis

222

Amino Acids

25.58

Weight (kDa)

6.13

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004589)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17380 AT4G35410 AT4G35410
fragaria_vesca	FvH4_2g17210 FvH4_3g25720 FvH4_3g25720 FvH4_5g26670 FvH4_5g26670
malus_domestica	MD05G1145600.v1.1 MD06G1000900.v1.1 MD10G1145000.v1.1
prunus_persica	Prupe.5G001200_v2.0.a1 Prupe.8G183400_v2.0.a1
pyrus_communis	pycom05g14040 pycom10g12480
rosa_chinensis	RchiOBHm_Chr6g0281691
rosa_laevigata	RLG00000002461 RLG00000012950
rosa_multiflora	Rmu_ssc0000126.1_g000072
rosa_roxburghii	Rroxscaffold_7G00186910
rosa_rugosa	Rorug07G0169900 Rorug07G0170000
rosa_samantha	Rh1BG348200 Rh6BG258600 Rh6CG257500 Rh7AG309800 Rh7BG301000 Rh7CG329000 Rh7DG309400
rosa_wichuraiana	Rw6G022140 Rw7G026280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccII	CGCG	1 cut(s)	529
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	1 cut(s)	465
AcoI	YGGCCR	1 cut(s)	194
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	3 cut(s)	454, 473, 520
AgeI	ACCGGT	1 cut(s)	297
AgsI	TTSAA	5 cut(s)	176, 239, 349, 518, 594
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	220, 472
AluBI	AGCT	3 cut(s)	182, 228, 283
AluI	AGCT	3 cut(s)	182, 228, 283
Alw21I	GWGCWC	2 cut(s)	381, 492
Alw44I	GTGCAC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	465
AoxI	GGCC	1 cut(s)	194
ApaLI	GTGCAC	1 cut(s)	377
ApeKI	GCWGC	1 cut(s)	182
AseI	ATTAAT	1 cut(s)	588
AsiGI	ACCGGT	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	561
AsuHPI	GGTGA	1 cut(s)	661
BaeGI	GKGCMC	1 cut(s)	381
BalI	TGGCCA	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	353
Bbv12I	GWGCWC	2 cut(s)	381, 492
BbvCI	CCTCAGC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	222, 474
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	2 cut(s)	183, 530
BlsI	GCNGC	2 cut(s)	184, 531
Bme1390I	CCNGG	2 cut(s)	222, 474
BmrFI	CCNGG	2 cut(s)	222, 474
BmsI	GCATC	3 cut(s)	282, 376, 546
BpiI	GAAGAC	1 cut(s)	353
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	224, 389
BsaWI	WCCGGW	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	3 cut(s)	454, 473, 520
Bse118I	RCCGGY	1 cut(s)	297
Bse1I	ACTGG	2 cut(s)	140, 197
Bse3DI	GCAATG	1 cut(s)	574
BseBI	CCWGG	2 cut(s)	222, 474
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	3 cut(s)	454, 473, 520
BseMI	GCAATG	1 cut(s)	574
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	140, 197
BseSI	GKGCMC	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	336
Bsh1236I	CGCG	1 cut(s)	529
BshFI	GGCC	1 cut(s)	196
BshTI	ACCGGT	1 cut(s)	297
BsiHKAI	GWGCWC	2 cut(s)	381, 492
BsiSI	CCGG	1 cut(s)	298
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	3 cut(s)	454, 473, 520
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	196
Bsp1286I	GDGCHC	3 cut(s)	381, 492, 603
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	529
BspHI	TCATGA	1 cut(s)	243
BspPI	GGATC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	140, 197
BssAI	RCCGGY	1 cut(s)	297
BssMI	GATC	1 cut(s)	457
Bst2UI	CCWGG	2 cut(s)	222, 474
BstAPI	GCANNNNNTGC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	275
BstENI	CCTNNNNNAGG	1 cut(s)	518
BstF5I	GGATG	1 cut(s)	391
BstFNI	CGCG	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	1 cut(s)	460
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	573
BstNI	CCWGG	2 cut(s)	222, 474
BstSCI	CCNGG	2 cut(s)	220, 472
BstSLI	GKGCMC	1 cut(s)	381
BstUI	CGCG	1 cut(s)	529
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	2 cut(s)	262, 442
BtsIMutI	CAGTG	2 cut(s)	262, 442
Cac8I	GCNNGC	1 cut(s)	281
CciI	TCATGA	1 cut(s)	243
CfoI	GCGC	1 cut(s)	561
Cfr10I	RCCGGY	1 cut(s)	297
CsiI	ACCWGGT	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	654
CspAI	ACCGGT	1 cut(s)	297
CviAII	CATG	3 cut(s)	76, 244, 307
CviJI	RGCY	8 cut(s)	182, 196, 228, 283, 524, 532, 601, 629
CviKI_1	RGCY	8 cut(s)	182, 196, 228, 283, 524, 532, 601, 629
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	220, 472
EcoT22I	ATGCAT	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	603
FaeI	CATG	3 cut(s)	79, 247, 310
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	3 cut(s)	75, 243, 306
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	183, 530
FokI	GGATG	1 cut(s)	398
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	183, 530
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	2 cut(s)	183, 530
HaeIII	GGCC	1 cut(s)	196
HapII	CCGG	1 cut(s)	298
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	3 cut(s)	79, 247, 310
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HinfI	GANTC	3 cut(s)	118, 206, 613
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	1 cut(s)	661
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	106, 555, 585
Hpy188III	TCNNGA	6 cut(s)	146, 203, 244, 455, 518, 610
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	3 cut(s)	241, 343, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	573
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	3 cut(s)	79, 247, 310
HspAI	GCGC	1 cut(s)	559
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	2 cut(s)	495, 566
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	3 cut(s)	282, 376, 546
MabI	ACCWGGT	1 cut(s)	472
MaeI	CTAG	1 cut(s)	161
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	2 cut(s)	188, 353
MfeI	CAATTG	1 cut(s)	252
MhlI	GDGCHC	3 cut(s)	381, 492, 603
MlsI	TGGCCA	1 cut(s)	196
MluCI	AATT	4 cut(s)	252, 310, 410, 589
MluNI	TGGCCA	1 cut(s)	196
MlyI	GAGTC	2 cut(s)	215, 607
MnlI	CCTC	5 cut(s)	284, 408, 458, 514, 640
Mox20I	TGGCCA	1 cut(s)	196
Mph1103I	ATGCAT	1 cut(s)	73
MscI	TGGCCA	1 cut(s)	196
MseI	TTAA	3 cut(s)	29, 165, 588
MslI	CAYNNNNRTG	2 cut(s)	66, 384
Msp20I	TGGCCA	1 cut(s)	196
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	2 cut(s)	222, 474
MunI	CAATTG	1 cut(s)	252
MvaI	CCWGG	2 cut(s)	222, 474
MvnI	CGCG	1 cut(s)	529
MwoI	GCNNNNNNNGC	1 cut(s)	573
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	79, 247, 310
NsiI	ATGCAT	1 cut(s)	73
PagI	TCATGA	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	473
PinAI	ACCGGT	1 cut(s)	297
PkrI	GCNGC	2 cut(s)	184, 531
PleI	GAGTC	2 cut(s)	214, 607
PpsI	GAGTC	2 cut(s)	214, 607
PshBI	ATTAAT	1 cut(s)	588
Psp6I	CCWGG	2 cut(s)	220, 472
PspGI	CCWGG	2 cut(s)	220, 472
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
RseI	CAYNNNNRTG	2 cut(s)	66, 384
SaqAI	TTAA	3 cut(s)	29, 165, 588
SatI	GCNGC	2 cut(s)	183, 530
Sau3AI	GATC	1 cut(s)	457
SchI	GAGTC	2 cut(s)	215, 607
ScrFI	CCNGG	2 cut(s)	222, 474
SduI	GDGCHC	3 cut(s)	381, 492, 603
SetI	ASST	7 cut(s)	184, 230, 276, 285, 354, 475, 651
SexAI	ACCWGGT	1 cut(s)	472
SfaNI	GCATC	3 cut(s)	282, 376, 546
SmiMI	CAYNNNNRTG	2 cut(s)	66, 384
SmlI	CTYRAG	2 cut(s)	203, 404
SmoI	CTYRAG	2 cut(s)	203, 404
SpeI	ACTAGT	1 cut(s)	160
Sse9I	AATT	4 cut(s)	252, 310, 410, 589
SsiI	CCGC	1 cut(s)	529
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	2 cut(s)	220, 472
TasI	AATT	4 cut(s)	252, 310, 410, 589
TauI	GCSGC	1 cut(s)	532
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	29, 165, 588
Tru9I	TTAA	3 cut(s)	29, 165, 588
TscAI	CASTG	2 cut(s)	269, 449
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	4 cut(s)	260, 323, 446, 639
TspRI	CASTG	2 cut(s)	269, 449
Van91I	CCANNNNNTGG	1 cut(s)	473
VneI	GTGCAC	1 cut(s)	377
VspI	ATTAAT	1 cut(s)	588
XagI	CCTNNNNNAGG	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.