Rw7G026280

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004589
Physical Location & Seq
Forward (+)
33361139 .. 33362209
1071 bp
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UTR
Exon/CDS
Intron
Rw7G026280.1

Sequence Viewer

Length: 393 bp
ATGCGGGAATTGAGTGGTATAATACTCAATCGAGGCCCCAAGCTGTGCAACTTCATAGAGTGGAGAGGACTTAAAGTTGTCTATAAAAGATACGCGAGCCTCTATTTTTGTATGTGTATTGACCAAGAAGACAATGAACTGGAGATTCTTGAAATAATTCACCATTACGTTGAGATACTTGATCGATATTTTGGCAGTGTTTGTGAGCTGGATTTGATTTTTAACTTCCATAAGGCTTACTATATACTAGATGAACTTCTACTTGCTGGTGAGCTGCAAGAGTCAAGTAAGAGAGCAATAGGACGAATGATAGCTATACATGATCGATTTGTGGAGGCTGCTAAAGAGGAGGCCAGTTCAATAAGCAATTTACTCGCACAAGTTAATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

130

Amino Acids

15.18

Weight (kDa)

5.19

Isoelectric Point (pI)

42.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 3 - 109 6e-41 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 95
AciI CCGC 1 cut(s) 4
AgsI TTSAA 2 cut(s) 152, 360
AluBI AGCT 4 cut(s) 43, 208, 274, 314
AluI AGCT 4 cut(s) 43, 208, 274, 314
AoxI GGCC 2 cut(s) 34, 351
ApeKI GCWGC 2 cut(s) 274, 338
Asp700I GAANNNNTTC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 152, 281
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 261, 325
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BfaI CTAG 1 cut(s) 248
BisI GCNGC 2 cut(s) 275, 339
BlsI GCNGC 2 cut(s) 276, 340
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 37
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 161
Bsa29I ATCGAT 2 cut(s) 184, 325
Bse1I ACTGG 2 cut(s) 144, 354
BseCI ATCGAT 2 cut(s) 184, 325
BseNI ACTGG 2 cut(s) 144, 354
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 2 cut(s) 261, 325
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 36, 353
BshVI ATCGAT 2 cut(s) 184, 325
BsnI GGCC 2 cut(s) 36, 353
Bsp143I GATC 2 cut(s) 181, 322
BspACI CCGC 1 cut(s) 4
BspANI GGCC 2 cut(s) 36, 353
BspDI ATCGAT 2 cut(s) 184, 325
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 37
BsrI ACTGG 2 cut(s) 144, 354
BssMI GATC 2 cut(s) 181, 322
BstC8I GCNNGC 1 cut(s) 97
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 2 cut(s) 184, 325
BstMBI GATC 2 cut(s) 181, 322
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 2 cut(s) 261, 325
BstV2I GAAGAC 1 cut(s) 135
Bsu15I ATCGAT 2 cut(s) 184, 325
BsuRI GGCC 2 cut(s) 36, 353
BsuTUI ATCGAT 2 cut(s) 184, 325
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 35
ClaI ATCGAT 2 cut(s) 184, 325
CviAII CATG 1 cut(s) 320
CviJI RGCY 9 cut(s) 36, 43, 99, 208, 236, 274, 314, 338, 353
CviKI_1 RGCY 9 cut(s) 36, 43, 99, 208, 236, 274, 314, 338, 353
DpnI GATC 2 cut(s) 183, 324
DpnII GATC 2 cut(s) 181, 322
EcoO109I RGGNCCY 1 cut(s) 35
FaeI CATG 1 cut(s) 323
FatI CATG 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 275, 339
Fsp4HI GCNGC 2 cut(s) 275, 339
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 275, 339
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 2 cut(s) 36, 353
Hin1II CATG 1 cut(s) 323
HinfI GANTC 2 cut(s) 145, 281
HphI GGTGA 2 cut(s) 152, 281
Hpy188III TCNNGA 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 2 cut(s) 48, 277
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 2 cut(s) 181, 322
LpnPI CCDG 4 cut(s) 125, 194, 252, 367
Lsp1109I GCAGC 2 cut(s) 261, 325
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 168
MalI GATC 2 cut(s) 183, 324
MboI GATC 2 cut(s) 181, 322
MboII GAAGA 1 cut(s) 140
MluCI AATT 3 cut(s) 8, 156, 367
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 6 cut(s) 26, 59, 110, 328, 340, 343
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 3 cut(s) 72, 222, 384
MvnI CGCG 1 cut(s) 95
NdeII GATC 2 cut(s) 181, 322
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 276, 340
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 35
SaqAI TTAA 3 cut(s) 72, 222, 384
SatI GCNGC 2 cut(s) 275, 339
Sau3AI GATC 2 cut(s) 181, 322
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 1 cut(s) 290
SetI ASST 5 cut(s) 45, 171, 210, 276, 316
Sse9I AATT 3 cut(s) 8, 156, 367
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 248
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 31, 184, 325
TasI AATT 3 cut(s) 8, 156, 367
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 3 cut(s) 72, 222, 384
Tru9I TTAA 3 cut(s) 72, 222, 384
TscAI CASTG 1 cut(s) 202
TseI GCWGC 2 cut(s) 274, 338
TspDTI ATGAA 3 cut(s) 43, 150, 267
TspRI CASTG 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.