RLG00000012950

Belongs to the adaptor complexes small subunit family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004589
Physical Location & Seq
Reverse (-)
24250876 .. 24252329
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012950

Sequence Viewer

Length: 486 bp
ATGATTCAGTTTGTGCTTCTGATAAGTAGGCAAGGAAAAGTGAGGTTGACTAAATGGTACTCGCCATATACCCAAAAGGAAAGAAATAAGGTGCTTCGCGAGCTCAGTGGGGTGATCCTTGCACGAGGTCCCAAGCTCTGCAATTTTGTGGAGTGGAGAGAATACAAAGTTGTTTATAAGAGATATGCTAGTCTGTATTTCTGTATGTGTATCGATCAAGATGATAATGAACTAGAGATCCTTGAGATTATTCATCATTTTGTCGAAATTCTTGACCGATACTTTGGCAGTGTATGTGAATTGGATTTGATCTTTAACTTCCACAAGGCCTACTATATACTGGATGAACTTTTGATTGCTGGTGAACTCCAAGAGTCGAGTAAGAAAACGGTTGCACGGTTGATAGCAGCACAGGATTCTTTGGTGGAGACTGCAAAAGAGCAGGCTAGTTCAATAAGTAATATGATTGCGCAGGCCACTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
Clat_adaptor_s

Protein Analysis

162

Amino Acids

18.81

Weight (kDa)

6.83

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clat_adaptor_s PF01217 1 - 140 1.7e-55 Clathrin adaptor complex small chain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
Acc16I TGCGCA 1 cut(s) 471
AccII CGCG 1 cut(s) 99
AclWI GGATC 2 cut(s) 109, 232
AcsI RAATTY 1 cut(s) 267
AfaI GTAC 1 cut(s) 59
AgsI TTSAA 1 cut(s) 453
AloI GAACNNNNNNTCC 2 cut(s) 222, 254
AluBI AGCT 2 cut(s) 103, 136
AluI AGCT 2 cut(s) 103, 136
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 2 cut(s) 109, 232
AoxI GGCC 2 cut(s) 327, 474
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 1 cut(s) 267
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AspLEI GCGC 1 cut(s) 472
AspS9I GGNCC 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 124, 374
AvaII GGWCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 419
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 3 cut(s) 189, 233, 447
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 213
BseGI GGATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 419
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 329, 476
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 329, 476
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 4 cut(s) 114, 214, 237, 309
Bsp68I TCGCGA 1 cut(s) 99
BspANI GGCC 2 cut(s) 329, 476
BspCNI CTCAG 1 cut(s) 117
BspDI ATCGAT 1 cut(s) 213
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 130
BspPI GGATC 2 cut(s) 109, 232
BsrI ACTGG 1 cut(s) 345
BssMI GATC 4 cut(s) 114, 214, 237, 309
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 391, 399
BstC8I GCNNGC 3 cut(s) 101, 444, 474
BstDEI CTNAG 2 cut(s) 104, 480
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 472
BstKTI GATC 4 cut(s) 117, 217, 240, 312
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 4 cut(s) 114, 214, 237, 309
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 419
BstX2I RGATCY 1 cut(s) 237
BstYI RGATCY 1 cut(s) 237
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 2 cut(s) 329, 476
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 1 cut(s) 349
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 112, 295
BtuMI TCGCGA 1 cut(s) 99
Cac8I GCNNGC 3 cut(s) 101, 444, 474
CfoI GCGC 1 cut(s) 472
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 1 cut(s) 58
CviJI RGCY 5 cut(s) 103, 136, 329, 446, 476
CviKI_1 RGCY 5 cut(s) 103, 136, 329, 446, 476
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 104, 480
DpnI GATC 4 cut(s) 116, 216, 239, 311
DpnII GATC 4 cut(s) 114, 214, 237, 309
Ecl136II GAGCTC 1 cut(s) 103
Eco147I AGGCCT 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 105
Eco47I GGWCC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 105
FaiI YATR 9 cut(s) 67, 69, 177, 186, 206, 295, 336, 338, 464
FaqI GGGAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 1 cut(s) 356
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 3 cut(s) 189, 233, 447
FspI TGCGCA 1 cut(s) 471
GlaI GCGC 1 cut(s) 471
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 2 cut(s) 329, 476
HhaI GCGC 1 cut(s) 472
Hin6I GCGC 1 cut(s) 470
HinP1I GCGC 1 cut(s) 470
HincII GTYRAC 1 cut(s) 48
HindII GTYRAC 1 cut(s) 48
HinfI GANTC 3 cut(s) 4, 374, 416
HphI GGTGA 2 cut(s) 124, 374
Hpy166II GTNNAC 2 cut(s) 48, 365
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 3 cut(s) 98, 218, 272
Hpy8I GTNNAC 2 cut(s) 48, 365
HpyCH4III ACNGT 2 cut(s) 391, 399
HpyCH4V TGCA 4 cut(s) 122, 141, 395, 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 2 cut(s) 104, 480
HspAI GCGC 1 cut(s) 470
Kzo9I GATC 4 cut(s) 114, 214, 237, 309
LpnPI CCDG 5 cut(s) 326, 345, 398, 428, 458
Lsp1109I GCAGC 1 cut(s) 419
MaeI CTAG 3 cut(s) 189, 233, 447
MalI GATC 4 cut(s) 116, 216, 239, 311
MboI GATC 4 cut(s) 114, 214, 237, 309
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 3 cut(s) 142, 267, 299
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 2 cut(s) 36, 119
MseI TTAA 1 cut(s) 315
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 4 cut(s) 114, 214, 237, 309
NlaIV GGNNCC 1 cut(s) 130
NruI TCGCGA 1 cut(s) 99
NsbI TGCGCA 1 cut(s) 471
PceI AGGCCT 1 cut(s) 329
PfeI GAWTC 2 cut(s) 4, 416
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 128
PsiI TTATAA 1 cut(s) 177
Psp124BI GAGCTC 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PsuI RGATCY 1 cut(s) 237
RruI TCGCGA 1 cut(s) 99
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 4 cut(s) 114, 214, 237, 309
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 1 cut(s) 383
SduI GDGCHC 1 cut(s) 105
SetI ASST 5 cut(s) 47, 93, 105, 130, 138
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 3 cut(s) 142, 267, 299
SseBI AGGCCT 1 cut(s) 329
SspMI CTAG 3 cut(s) 189, 233, 447
SstI GAGCTC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 329
TaaI ACNGT 2 cut(s) 391, 399
TaqI TCGA 3 cut(s) 213, 264, 377
TaqII GACCGA 1 cut(s) 291
TasI AATT 3 cut(s) 142, 267, 299
TfiI GAWTC 2 cut(s) 4, 416
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 2 cut(s) 112, 295
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 3 cut(s) 242, 243, 360
TspRI CASTG 2 cut(s) 112, 295
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 1 cut(s) 267
XspI CTAG 3 cut(s) 189, 233, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.