Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003203

Physical Location & Seq

Genomic Coordinates Forward (+)

7941778 .. 7943388

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAATGATCTGATGACAAAATCGTTCTTAAGTTATGTGGAATTGAAGAAACAAGCGAGGACAGATATGGAATCTGATCGAGATTTGGAGAAAGGTGAAGACTTTAACTTCGATTTCAGTCCCGCAGATGAAGAAAACCTCTCTGGTTTCTTTCAAGAAATCGAAACCATCAAAACCCTAATCGAAGAGATCACTCATCTCTTACTCGATCTCCAAAACCTAAACGAAGAGACCAAATCAACTCACAGCACCAAGATCTTACGTGGGTTGCGAGACAGAATGGAATCAAACATCGTCACCATCTCTCGTAAGGCCAACACAGTCAAAACCCTAATCGAGACTCTGGAGAAGAGAAACGTTGCGAATCGTACGAGTTTCAAGGAAGGATCTTGCGTGGACAGGACAAGAACTTCGATCACTAATGGAGTTAGAAAGAAACTTAGAGATACGATGAGTGAGTTTCATCGATTGAGGGAGAGAATCTTTGCTGATTACAGAGAAGATCTCAAAAGGAAGTATTTTTTAGCGACTGGTGAAGAACCAAGTAATGAAGACATGGAGAAGATGATCTCTGGATCAGGGTCTTGTTCTGATTTGGTTAAAACATTTGAAGTGAAGCCAGAGATGGATTTGAAGACTAAAGAGAGACATGAAGCAGTGAATGATATCAAGAGAAGTCTTAATAGGCTTCATCAAGTGTTTCTTGACATGGCTGTTCTTGTTGAGACTCAAGGAGATCGTATTGATGACATTGAAGCTAATGTGGCTAATGCAGGGAGCTTTGTGAGTGGAGGTACTAATAGTTTGTACTATGCTAATCAGATGAAGAAGAAGACTAAGAGTTGGGTTCTTTGGGTTTCGATTTTGGGTGTTCTTATTCTTCTTGTGTGTGTCATCTCAATGCTTGCTTCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031201 GO:0031224 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 ko04130 ko04721 map00770 map01100 map04130 map04721

Pfam Domains

Protein Families

CTP_transf_like SNARE Syntaxin

Protein Analysis

305

Amino Acids

35.04

Weight (kDa)

6.07

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	44 - 193	5.8e-43	Syntaxin
SNARE	PF05739	248 - 296	1.3e-06	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18260 AT2G18260
fragaria_vesca	FvH4_1g13020 FvH4_2g09080 FvH4_2g09080
malus_domestica	MD02G1144800.v1.1 MD05G1064700.v1.1 MD15G1259000.v1.1
prunus_persica	Prupe.7G156800_v2.0.a1 Prupe.8G094700_v2.0.a1 Prupe.8G094700_v2.0.a1
pyrus_communis	pycom02g11470 pycom05g05560 pycom15g22740
rosa_chinensis	RchiOBHm_Chr2g0101181 RchiOBHm_Chr6g0264961
rosa_laevigata	RLG00000014227 RLG00000017053
rosa_multiflora	Rmu_co8052262.1_g000001 Rmu_sc0002934.1_g000038 Rmu_sc0006314.1_g000005
rosa_roxburghii	Rroxscaffold_175G00432060 Rroxscaffold_2G00141520 Rroxscaffold_7G00203130
rosa_rugosa	Rorug02G0100400 Rorug02G0100500 Rorug06G0014100
rosa_samantha	Rh2AG144200 Rh2BG149200 Rh2CG150500 Rh2DG149700 Rh6AG135300 Rh6BG132700 Rh6CG131400 Rh6DG118400
rosa_wichuraiana	Rw2G011300 Rw6G011690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AclI	AACGTT	1 cut(s)	357
AclWI	GGATC	2 cut(s)	394, 583
AfaI	GTAC	3 cut(s)	370, 796, 809
AflII	CTTAAG	1 cut(s)	28
AgsI	TTSAA	6 cut(s)	46, 155, 379, 611, 634, 755
AluBI	AGCT	2 cut(s)	758, 780
AluI	AGCT	2 cut(s)	758, 780
Alw26I	GTCTC	5 cut(s)	224, 267, 332, 640, 719
AlwI	GGATC	2 cut(s)	394, 583
AoxI	GGCC	1 cut(s)	312
ArsI	GACNNNNNNTTYG	4 cut(s)	92, 124, 394, 426
AsuHPI	GGTGA	3 cut(s)	107, 289, 545
BbsI	GAAGAC	4 cut(s)	105, 558, 641, 839
BccI	CCATC	3 cut(s)	176, 308, 619
BcoDI	GTCTC	5 cut(s)	224, 267, 332, 640, 719
BfrI	CTTAAG	1 cut(s)	28
BglII	AGATCT	2 cut(s)	255, 502
BpiI	GAAGAC	4 cut(s)	105, 558, 641, 839
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpmI	CTGGAG	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	714
Bsa29I	ATCGAT	1 cut(s)	466
BsaAI	YACGTR	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	224
BsaXI	ACNNNNNCTCC	2 cut(s)	195, 225
Bse1I	ACTGG	1 cut(s)	535
BseCI	ATCGAT	1 cut(s)	466
BseNI	ACTGG	1 cut(s)	535
BshFI	GGCC	1 cut(s)	314
BshVI	ATCGAT	1 cut(s)	466
BsiWI	CGTACG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	5 cut(s)	224, 267, 332, 640, 719
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	314
Bso31I	GGTCTC	1 cut(s)	224
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	314
BspDI	ATCGAT	1 cut(s)	466
BspPI	GGATC	2 cut(s)	394, 583
BspTI	CTTAAG	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	535
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	3 cut(s)	180, 222, 344
BstAFI	CTTAAG	1 cut(s)	28
BstBAI	YACGTR	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	906
BstDEI	CTNAG	2 cut(s)	440, 837
BstMAI	GTCTC	5 cut(s)	224, 267, 332, 640, 719
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstV2I	GAAGAC	4 cut(s)	105, 558, 641, 839
BstX2I	RGATCY	3 cut(s)	255, 386, 502
BstYI	RGATCY	3 cut(s)	255, 386, 502
Bsu15I	ATCGAT	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	314
BsuTUI	ATCGAT	1 cut(s)	466
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	906
ClaI	ATCGAT	1 cut(s)	466
Csp6I	GTAC	3 cut(s)	369, 795, 808
CviAII	CATG	3 cut(s)	556, 650, 709
CviJI	RGCY	7 cut(s)	314, 619, 688, 713, 758, 767, 780
CviKI_1	RGCY	7 cut(s)	314, 619, 688, 713, 758, 767, 780
CviQI	GTAC	3 cut(s)	369, 795, 808
DdeI	CTNAG	2 cut(s)	440, 837
Eam1104I	CTCTTC	3 cut(s)	180, 222, 344
EarI	CTCTTC	3 cut(s)	180, 222, 344
Eco31I	GGTCTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	667
EcoRV	GATATC	1 cut(s)	667
FaeI	CATG	3 cut(s)	559, 653, 712
FaiI	YATR	6 cut(s)	36, 68, 557, 651, 710, 813
FalI	AAGNNNNNCTT	2 cut(s)	687, 719
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	3 cut(s)	555, 649, 708
FauI	CCCGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	314
Hin1II	CATG	3 cut(s)	559, 653, 712
HinfI	GANTC	6 cut(s)	71, 284, 340, 364, 480, 727
HphI	GGTGA	3 cut(s)	107, 289, 545
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	4 cut(s)	12, 76, 592, 822
Hpy188III	TCNNGA	7 cut(s)	80, 155, 337, 344, 573, 670, 704
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	1 cut(s)	377
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	262, 357
HpyCH4V	TGCA	1 cut(s)	773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	2 cut(s)	440, 837
HpySE526I	ACGT	2 cut(s)	262, 357
Hsp92II	CATG	3 cut(s)	559, 653, 712
LmnI	GCTCC	1 cut(s)	777
LpnPI	CCDG	8 cut(s)	129, 329, 385, 516, 558, 564, 633, 759
MaeII	ACGT	2 cut(s)	262, 357
MaeIII	GTNAC	1 cut(s)	295
MflI	RGATCY	3 cut(s)	255, 386, 502
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	2 cut(s)	334, 721
MnlI	CCTC	4 cut(s)	51, 149, 465, 785
MseI	TTAA	4 cut(s)	29, 105, 600, 681
MslI	CAYNNNNRTG	1 cut(s)	899
MspCI	CTTAAG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	764
NlaIII	CATG	3 cut(s)	559, 653, 712
NmuCI	GTSAC	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	268
PfeI	GAWTC	4 cut(s)	71, 284, 364, 480
Pfl23II	CGTACG	1 cut(s)	368
PleI	GAGTC	2 cut(s)	334, 721
PpsI	GAGTC	2 cut(s)	334, 721
Ppu21I	YACGTR	1 cut(s)	263
Psp1406I	AACGTT	1 cut(s)	357
PspLI	CGTACG	1 cut(s)	368
PsuI	RGATCY	3 cut(s)	255, 386, 502
RsaI	GTAC	3 cut(s)	370, 796, 809
RsaNI	GTAC	3 cut(s)	369, 795, 808
RseI	CAYNNNNRTG	1 cut(s)	899
SaqAI	TTAA	4 cut(s)	29, 105, 600, 681
SchI	GAGTC	2 cut(s)	334, 721
SetI	ASST	8 cut(s)	97, 141, 222, 265, 360, 760, 782, 796
SmiMI	CAYNNNNRTG	1 cut(s)	899
SmlI	CTYRAG	2 cut(s)	28, 729
SmoI	CTYRAG	2 cut(s)	28, 729
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	265, 360
TaqI	TCGA	9 cut(s)	79, 111, 162, 183, 207, 336, 413, 466, 860
TasI	AATT	1 cut(s)	41
TatI	WGTACW	1 cut(s)	807
TfiI	GAWTC	4 cut(s)	71, 284, 364, 480
Tru1I	TTAA	4 cut(s)	29, 105, 600, 681
Tru9I	TTAA	4 cut(s)	29, 105, 600, 681
TscAI	CASTG	1 cut(s)	663
TseFI	GTSAC	1 cut(s)	295
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	7 cut(s)	17, 144, 452, 564, 666, 680, 839
TspRI	CASTG	1 cut(s)	663
Vha464I	CTTAAG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.